ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 13.2.1

Subclass Accession number: 4303
Subclass: 13.2.1

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 5

Average sequence ID (%) : 43.8 +/- 25.3
Average RMSD (Å) : 0.360 +/- 0.089

Consensus geometry

d (Å): 13

delta (°): 135-180

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	hXpXXEKIXEchXhphh
(φψ)-conformation:	bbabaaaappgpaapbb

Pattern:	x	x	x	[FLVY]	[AIL]	[AG]	[AS]	[DS]	[ADNV]	[KL]	[DE]	[KN]	[I]	x	[E]	[GN]	[AG]	[PS]	[FLM]	[QR]	[nv]	[FY]	[FMVY]	[DER]	[hrs]	[I]
Conservation:	-0.968	-0.732	-0.673	-0.413	-0.553	0.115	0.169	0.630	-1.502	-0.735	1.099	0.514	1.236	-1.408	1.963	0.557	0.630	0.392	-0.116	0.691	-1.425	1.756	-0.627	-0.444	-1.394	1.236

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bj7_*_17	1bj7	-	17	42	RIIYAAADNKDKIVEGGPLRNYYRRI	EEEEEEESSGGGTSTT-TT--EEEEE	bxabbbbaxaaaaxpgxaaxbxpabb
1dzk_A_17	1dzk	A	17	42	ITSYIGSSDLEKIGENAPFQVFMRSI	EEEEEEES-GGGTSTT-TT--EEEEE	bxabbbbabaaaaxpvxaaxbbxabb
1e5p_A_11	1e5p	A	11	36	YTIVIAADNLEKIEEGGPLRFYFRHI	EEEEEE-SSGGGTSTT-TT--EEEEE	bxabbbbabaaaaxpvxaaxbbpabb
1ew3_A_38	1ew3	A	38	63	YSIFLASDVKEKIEENGSMRVFVDVI	EEEEEEESSGGGTSTT-TT-EEEEEE	bxabbbbabaaaaxpvxaaxbbxabb
1gm6_A_23	1gm6	A	23	48	YSILLASDAKENIEENGSMRVFVEHI	EEEEEEETTGGGGSTT-TT--EEEEE	bxabbbbabaaaaxpvxaaxxbxabb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1dzk_A_17	1dzk	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	T - 18
1dzk_A_17	1dzk	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	I - 21
1dzk_A_17	1dzk	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	G - 22
1dzk_A_17	1dzk	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	F - 35
1dzk_A_17	1dzk	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	V - 37
1dzk_A_17	1dzk	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	M - 39
1dzk_A_17	1dzk	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	I - 42
1e5p_A_11	1e5p	A	MSESELENOMETHIONINE	I - 15
1e5p_A_11	1e5p	A	MSESELENOMETHIONINE	A - 16
1e5p_A_11	1e5p	A	MSESELENOMETHIONINE	A - 17
1e5p_A_11	1e5p	A	MSESELENOMETHIONINE	D - 18
1e5p_A_11	1e5p	A	MSESELENOMETHIONINE	I - 23
1e5p_A_11	1e5p	A	MSESELENOMETHIONINE	L - 29
1e5p_A_11	1e5p	A	MSESELENOMETHIONINE	F - 31
1e5p_A_11	1e5p	A	MSESELENOMETHIONINE	I - 36
1gm6_A_23	1gm6	A	GOLGLYCEROL	L - 27
1gm6_A_23	1gm6	A	GOLGLYCEROL	M - 41
1gm6_A_23	1gm6	A	GOLGLYCEROL	V - 43
1gm6_A_23	1gm6	A	GOLGLYCEROL	V - 45
1gm6_A_23	1gm6	A	CDCADMIUM ION	E - 46
1gm6_A_23	1gm6	A	CDCADMIUM ION	H - 47

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1dzk_A_17	1dzk	A	AC1PRZ BINDING SITE FOR CHAIN A	F - 35
1gm6_A_23	1gm6	A	CAVODOUR-BINDING CAVITY	V - 45
1gm6_A_23	1gm6	A	CDCD BINDING SITE FOR CHAIN A	E - 46
1gm6_A_23	1gm6	A	CDCD BINDING SITE FOR CHAIN A	H - 47
1gm6_A_23	1gm6	A	CAVODOUR-BINDING CAVITY	I - 48

Clusters included in this Subclass