ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 13.8.1

Subclass Accession number: 4309
Subclass: 13.8.1

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 2.5 (>50 %)  2.5.1 (>50 %)  2.5.1.61
GO : GO:0004418 (>50 %)  GO:0016765 (>50 %)
SCOP : 53849 (>75 %)  53850 (>75 %)  53851 (>75 %)

Number of loops: 3

Average sequence ID (%) : 43.3 +/- 30.0
Average RMSD (Å) : 0.467 +/- 0.208

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	hScchcphcXhXXGXXV
(φψ)-conformation:	bbaababaaappplpbb

Pattern:	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x
Conservation:	-0.077	-0.077	-0.296	1.237	0.799	0.142	-0.296	-0.296	-0.077	-0.077	-0.296	-0.733	-0.077	-0.077	-0.952	2.988	-0.077	-1.609	1.237	-1.390

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1gtk_A_106	1gtk	A	107	126	AFVSNNYDSLDALPAGSIVG	EEE-SS-SSGGG--TT-EEE	bxbbaababaaaxxpvxbbx
1p99_A_122	1p99	A	122	141	GIYSDKIKDVKKVKDGAKVV	EEE-SS-S-GGG--TT-EEE	bxbbaababaaaxxxvpxbb
1pda_*_106	1pda	-	107	126	AFVSNNYDSLDALPAGSIVG	EEE-SS-SSTTTS-TT-EEE	bxbbaababaaaxxpvpbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1gtk_A_106	1gtk	A	DPM3-{2-[4-(2-CARBOXY-ETHYL)-3-CARBOXYMETHYL-5H-PYRROL-2-YLMETHYL]-4-CARBOXYMETHYL-5-METHYL-2H-PYRROL-3-YL}-PROPIONIC ACID	D - 106
1gtk_A_106	1gtk	A	DPM3-{2-[4-(2-CARBOXY-ETHYL)-3-CARBOXYMETHYL-5H-PYRROL-2-YLMETHYL]-4-CARBOXYMETHYL-5-METHYL-2H-PYRROL-3-YL}-PROPIONIC ACID	G - 126

Clusters included in this Subclass

CLUSTER: AR.13.28