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Information on SUBCLASS 1.1.7
Subclass Accession number: 4354
Subclass: 1.1.7 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 24

Average sequence ID (%) : 11.4 +/- 13.1
Average RMSD (Å) : 0.550 +/- 0.198

Consensus geometry
d (Å): 9 delta (°): 0-45 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XXpXp
(φψ)-conformation: aapaa
Pattern: xxx[afilmtv]x[agkqrst][cdehnqrst][deknpqrs]xxxxx
Conservation:-0.732-0.930-1.0062.2930.1440.8250.8850.6420.282-1.356-0.536-0.475-0.036
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b8a_A_1241b8a   A124136RFMDLRRPEVMAIHHHHTTSHHHHHHaaaaaaxaaaaaa
1cke_A_941cke   A100112ASQVAAFPRVREAHHHHTT-HHHHHHaaaaaaxaaaaaa
1ehy_A_1511ehy   A152164YSQFHQLDMAVEVHHHHTT-HHHHHHaaaaaaxaaaaaa
1fxx_A_2021fxx   A207219YLFTHRNKHKLMAHHHHT-SHHHHHHaaaaaaxaaaaaa
1g2i_A_721g2i   A7385PERVRLNEKAVSIHHHHTT-HHHHHHaaaaaaxaaaaaa
1iz0_A_2441iz0   A244256LTPLLREGALVEEHHHHTT-HHHHHHaaaaaaxaaaaaa
1j9m_A_1541j9m   A161173ASSAMKNSTFRTVHHHHTTSHHHHHHaaaaaaxaaaaaa
1jdh_A_2081jdh   A218230LHNLSHHREGLLAHHHHTTSHHHHHHaaaaaabaaaaaa
1jdh_A_3341jdh   A344356LKVLSVCSSNKPAHHHHTTSTTHHHHaaaaaaxaaaaaa
1jdh_A_5661jdh   A577589LHILARDVHNRIVHHHHTTSHHHHHHaaaaaaxaaaaaa
1jdh_A_6081jdh   A618630LCELAQDKEAAEAHHHHTTSHHHHHHaaaaaabaaaaaa
1l0w_A_1311l0w   A131143RYLDLRRRRMQENHHHHTTSHHHHHHaaaaaaxaaaaaa
1lqy_A_281lqy   A4052YVKMSQDPELAAKHHHHHTSHHHHHHaaaaaabaaaaaa
1m8z_A_10331m8z   A10331045TEQLVQDQYGNYVHHHHTTSTTHHHHaaaaaaxaaaaaa
1m8z_A_10691m8z   A10691081VLVLSQHKFASNVHHHHHTSTTHHHHaaaaaaxaaaaaa
1m8z_A_9971m8z   A9971009VFALSTHPYGCRVHHHHHTSTTHHHHaaaaaabaaaaaa
1mdw_A_1051mdw   A111123IASLTLNEEILARHHHHTT-HHHHHHaaaaaabaaaaaa
1nm8_A_2351nm8   A242254YNTLIKDKVNRDSHHHHTTSHHHHHHaaaaaaxaaaaaa
1oi4_A_971oi4   A98110PDYLRGDNRFVTFHHHHTTSHHHHHHaaaaaabaaaaaa
1oj6_A_521oj6   A5264PEDSLSSPEFLDHHHHHTT-HHHHHHaaaaaaxaaaaaa
1poi_A_2591poi   A265277YDKVSKTQEDFDAHHHHTTSHHHHHHaaaaaabaaaaaa
1r5l_A_1291r5l   A140152SELIVQEVETQRNHHHHTTSHHHHHHaaaaaaxaaaaaa
1uuz_A_61uuz   A618LFELLGQPGYKATHHHHTTSHHHHHHaaaaaaxaaaaaa
3mbp_*_3053mbp   -308320EEELAKDPRIAATHHHHTTSHHHHHHaaaaaaxaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1g2i_A_721g2i   A     MSESELENOMETHIONINE S - 84
1g2i_A_721g2i   A     MSESELENOMETHIONINE I - 85
1g2i_A_721g2i   A     MSESELENOMETHIONINE A - 86
1g2i_A_721g2i   A     MSESELENOMETHIONINE R - 87
1iz0_A_2441iz0   A     MSESELENOMETHIONINE F - 260
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 60
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 63
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 64
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 67
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 68
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 69
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 71
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 72
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 73
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 74
1oj6_A_521oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 77
1r5l_A_1291r5l   A     VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL A - 129
1r5l_A_1291r5l   A     VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL Y - 130
1r5l_A_1291r5l   A     VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL V - 132
1r5l_A_1291r5l   A     VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL F - 133
1r5l_A_1291r5l   A     VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL S - 136
1r5l_A_1291r5l   A     VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL L - 137
1r5l_A_1291r5l   A     VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL S - 140
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1oj6_A_521oj6   A AC1HEM BINDING SITE FOR CHAIN AH - 64
1oj6_A_521oj6   A AC1HEM BINDING SITE FOR CHAIN AK - 67
1oj6_A_521oj6   A AC2HEM BINDING SITE FOR CHAIN BT - 77

Clusters included in this Subclass
CLUSTER: HH.2.20
CLUSTER: HH.3.16
CLUSTER: HH.4.10
CLUSTER: HH.4.139