ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 1.1.9

Subclass Accession number: 4356
Subclass: 1.1.9

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 22

Average sequence ID (%) : 8.6 +/- 11.9
Average RMSD (Å) : 0.600 +/- 0.177

Consensus geometry

d (Å): 9

delta (°): 0-45

theta (°): 45-90

rho (°): 180-225

Consensus Sequence:	XXpXX
(φψ)-conformation:	aapaa

Pattern:	x	x	x	x	x	x	x	x	[dekpqr]	x	x	x
Conservation:	-0.014	0.735	-0.979	-0.429	-0.381	0.011	-0.359	1.068	2.402	-1.317	-0.621	-0.115

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1atg_*_204	1atg	-	209	220	QFMSWMKGPKAV	HHHHHTTSHHHH	aaaaaaaxaaaa
1dk8_A_234	1dk8	A	234	245	TYPSFLKSDIYL	HHHHHTTSHHHH	aaaaaaaxaaaa
1f3l_A_215	1f3l	A	216	227	VYFSSYGHYGIH	HHHHHTSSSHHH	aaaaaaaxaaaa
1g8m_A_452	1g8m	A	464	475	NSWWLRHHPRVL	HHHHHTT-HHHH	aaaaaaapaaaa
1gq8_A_290	1gq8	A	290	301	STEAQGFTPGSF	HHHHHTTSHHHH	aaaaaaaxaaaa
1h4p_A_198	1h4p	A	210	221	YILKKYSAEEYL	HHHHHTTSHHHH	aaaaaaaxaaaa
1i9z_A_761	1i9z	A	761	772	LSYLFEYDQLNK	HHHHHTTBHHHH	aaaaaaaxaaaa
1ihu_A_408	1ihu	A	413	424	LLEEDLRSPCTE	HHHHHTTSHHHH	aaaaaaaxaaaa
1ivw_A_102	1ivw	A	108	119	VEQLLATDERWL	HHHHHTT-HHHH	aaaaaaaxaaaa
1j1n_A_326	1j1n	A	331	342	KFFDFYFSRPGR	HHHHHTTSHHHH	aaaaaaabaaaa
1j77_A_39	1j77	A	55	66	AVDHIYKDAELN	HHHHHHT-HHHH	aaaaaaapaaaa
1jyo_E_77	1jyo	E	85	96	HALTEKYGETAV	HHHHHTTSHHHH	aaaaaaaxaaaa
1kbl_A_200	1kbl	A	210	221	AVFRSWDNPRAI	HHHHHTTSHHHH	aaaaaaapaaaa
1l7a_A_235	1l7a	A	242	253	MKTLSYFDIMNL	HHHHHTT-HHHH	aaaaaaaxaaaa
1m1n_B_37	1m1n	B	42	53	EVFQWTTTKEYQ	HHHHHTTSHHHH	aaaaaaaxaaaa
1pkx_A_451	1pkx	A	463	474	NYWWLRHHPQVL	HHHHHTTSHHHH	aaaaaaaxaaaa
1q8b_A_72	1q8b	A	74	85	AVKIHFTKKHTI	HHHHHTTSHHHH	aaaaaaaxaaaa
1qhb_A_182	1qhb	A	188	199	AIERLNGLEWFN	HHHHHTTSHHHH	aaaaaaaxaaaa
1rql_A_53	1rql	A	56	67	HVRALTEMPRIA	HHHHHHT-HHHH	aaaaaaaxaaaa
1s29_A_8	1s29	A	16	27	KQVEFYFSDVNV	HHHHHHTSHHHH	aaaaaaaxaaaa
1sbp_*_236	1sbp	-	241	252	AYLKYLYSPEGQ	HHHHGGGSHHHH	aaaaaaaxaaaa
2hgs_A_297	2hgs	A	297	308	IATQLAGTKKVQ	HHHHHTTSHHHH	aaaaaaaxaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1atg_*_204	1atg	*	EDO1,2-ETHANEDIOL	I - 222
1atg_*_204	1atg	*	EDO1,2-ETHANEDIOL	A - 225
1dk8_A_234	1dk8	A	DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE	Y - 235
1dk8_A_234	1dk8	A	GOLGLYCEROL	L - 245
1f3l_A_215	1f3l	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	Y - 217
1f3l_A_215	1f3l	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	F - 218
1f3l_A_215	1f3l	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	Y - 221
1f3l_A_215	1f3l	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	H - 227
1f3l_A_215	1f3l	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	M - 230
1f3l_A_215	1f3l	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	L - 231
1g8m_A_452	1g8m	A	MSESELENOMETHIONINE	I - 453
1g8m_A_452	1g8m	A	MSESELENOMETHIONINE	H - 454
1g8m_A_452	1g8m	A	GGUANOSINE-5'-MONOPHOSPHATE	H - 454
1g8m_A_452	1g8m	A	MSESELENOMETHIONINE	R - 457
1g8m_A_452	1g8m	A	MSESELENOMETHIONINE	P - 472
1g8m_A_452	1g8m	A	MSESELENOMETHIONINE	R - 473
1g8m_A_452	1g8m	A	GGUANOSINE-5'-MONOPHOSPHATE	R - 473
1g8m_A_452	1g8m	A	MSESELENOMETHIONINE	V - 474
1g8m_A_452	1g8m	A	GGUANOSINE-5'-MONOPHOSPHATE	V - 474
1g8m_A_452	1g8m	A	MSESELENOMETHIONINE	L - 475
1g8m_A_452	1g8m	A	GGUANOSINE-5'-MONOPHOSPHATE	L - 475
1ihu_A_408	1ihu	A	CDCADMIUM ION	E - 416
1ihu_A_408	1ihu	A	CDCADMIUM ION	D - 417
1ihu_A_408	1ihu	A	CDCADMIUM ION	R - 419
1ihu_A_408	1ihu	A	CDCADMIUM ION	S - 420
1ihu_A_408	1ihu	A	CDCADMIUM ION	P - 421
1ihu_A_408	1ihu	A	CDCADMIUM ION	C - 422
1ihu_A_408	1ihu	A	CDCADMIUM ION	T - 423
1j77_A_39	1j77	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Q - 49
1j77_A_39	1j77	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 52
1s29_A_8	1s29	A	MSESELENOMETHIONINE	F - 22
1s29_A_8	1s29	A	MSESELENOMETHIONINE	V - 27
2hgs_A_297	2hgs	A	MGMAGNESIUM ION	K - 305
2hgs_A_297	2hgs	A	SULSULFATE ANION	K - 305
2hgs_A_297	2hgs	A	ADPADENOSINE-5'-DIPHOSPHATE	K - 305
2hgs_A_297	2hgs	A	ADPADENOSINE-5'-DIPHOSPHATE	Q - 308

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gq8_A_290	1gq8	A	AC3CAC A 502 BINDING SITE	G - 299

Clusters included in this Subclass