Logo
Information on SUBCLASS 1.1.10
Subclass Accession number: 4357
Subclass: 1.1.10 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 15

Average sequence ID (%) : 10.3 +/- 15.5
Average RMSD (Å) : 0.547 +/- 0.188

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 45-90 rho (°): 180-225
Consensus Sequence: XXpXp
(φψ)-conformation: aapaa
Pattern: xx[fikltv][afklt][degnqs]x[dehknq]xx
Conservation:-1.6470.2290.0470.2451.698-0.7770.929-0.8920.168
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dpe_*_4131dpe   -417425ATEFSCAASHHHHSHHHHaaaaxaaaa
1fs7_A_2791fs7   A282290LYKTGIHGQHHHHSHHHHaaaaxaaaa
1g5a_A_171g5a   A2230GIEKSEDWRHHHHSHHHHaaaaxaaaa
1gu6_A_2661gu6   A269277TWTAGIHGKHHHHSHHHHaaaaxaaaa
1jdr_A_2331jdr   A237245SLIQDPKYLHHHHSHHHHaaaaxaaaa
1k3x_A_1151k3x   A115123QLTTHPFLQHHHHSHHHHaaaapaaaa
1kbl_A_5641kbl   A564572HMFFEADRIHHHHSHHHHaaaapaaaa
1mnm_A_791mnm   A7987PIVTQQEGRHHHHSHHHHaaaaxaaaa
1mxr_A_1331mxr   A139147DIVTNEQIQHHHH-HHHHaaaaxaaaa
1n8q_A_211n8q   A2129KNVLDVNSVHHHH-HHHHaaaaxaaaa
1o7t_A_2391o7t   A247255AFLAGKEGQHHHHSHHHHaaaaxaaaa
1qcf_A_3461qcf   A348356DFLKSDEGSHHHHSHHHHaaaaxaaaa
1qdb_A_2841qdb   A287295FWKSGIHGQHHHHSHHHHaaaaxaaaa
1rxx_A_1861rxx   A195203IYKFHPEFAHHHH-HHHHaaaaxaaaa
1tca_*_2261tca   -226234GSLTSQFSYHHHHBHHHHaaaaxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1fs7_A_2791fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 279
1fs7_A_2791fs7   A     CACALCIUM ION D - 279
1fs7_A_2791fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 280
1fs7_A_2791fs7   A     CACALCIUM ION W - 280
1fs7_A_2791fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 281
1fs7_A_2791fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 283
1fs7_A_2791fs7   A     CACALCIUM ION Y - 283
1fs7_A_2791fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 284
1fs7_A_2791fs7   A     ACTACETATE ION G - 286
1fs7_A_2791fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 287
1fs7_A_2791fs7   A     CACALCIUM ION I - 287
1fs7_A_2791fs7   A     ACTACETATE ION I - 287
1fs7_A_2791fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 288
1fs7_A_2791fs7   A     CACALCIUM ION H - 288
1fs7_A_2791fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 289
1gu6_A_2661gu6   A     CACALCIUM ION E - 266
1gu6_A_2661gu6   A     HECHEME C E - 266
1gu6_A_2661gu6   A     CACALCIUM ION Y - 267
1gu6_A_2661gu6   A     HECHEME C Y - 267
1gu6_A_2661gu6   A     GOLGLYCEROL E - 268
1gu6_A_2661gu6   A     GOLGLYCEROL T - 269
1gu6_A_2661gu6   A     CACALCIUM ION W - 270
1gu6_A_2661gu6   A     HECHEME C W - 270
1gu6_A_2661gu6   A     GOLGLYCEROL T - 271
1gu6_A_2661gu6   A     GOLGLYCEROL A - 272
1gu6_A_2661gu6   A     CACALCIUM ION I - 274
1gu6_A_2661gu6   A     HECHEME C I - 274
1gu6_A_2661gu6   A     CACALCIUM ION H - 275
1gu6_A_2661gu6   A     HECHEME C H - 275
1jdr_A_2331jdr   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 234
1jdr_A_2331jdr   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 235
1k3x_A_1151k3x   A     GOLGLYCEROL T - 117
1k3x_A_1151k3x   A     GOLGLYCEROL T - 118
1k3x_A_1151k3x   A     GOLGLYCEROL Q - 123
1k3x_A_1151k3x   A     GOLGLYCEROL R - 124
1qcf_A_3461qcf   A     PP11-TER-BUTYL-3-P-TOLYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-YLAMINE D - 348
1qdb_A_2841qdb   A     CACALCIUM ION G - 284
1qdb_A_2841qdb   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 284
1qdb_A_2841qdb   A     CACALCIUM ION F - 285
1qdb_A_2841qdb   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 285
1qdb_A_2841qdb   A     CACALCIUM ION W - 288
1qdb_A_2841qdb   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 288
1qdb_A_2841qdb   A     CACALCIUM ION I - 292
1qdb_A_2841qdb   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 292
1qdb_A_2841qdb   A     CACALCIUM ION H - 293
1qdb_A_2841qdb   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 293
1qdb_A_2841qdb   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 294
1rxx_A_1861rxx   A     MSESELENOMETHIONINE R - 186
1rxx_A_1861rxx   A     MSESELENOMETHIONINE E - 188
1rxx_A_1861rxx   A     MSESELENOMETHIONINE T - 189
1rxx_A_1861rxx   A     MSESELENOMETHIONINE L - 191
1rxx_A_1861rxx   A     MSESELENOMETHIONINE T - 192
1rxx_A_1861rxx   A     MSESELENOMETHIONINE I - 195
1rxx_A_1861rxx   A     MSESELENOMETHIONINE Y - 196
1rxx_A_1861rxx   A     MSESELENOMETHIONINE F - 202
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gu6_A_2661gu6   A HA4HEC BINDING SITE FOR CHAIN AE - 266
1gu6_A_2661gu6   A HA4HEC BINDING SITE FOR CHAIN AW - 270
1gu6_A_2661gu6   A HA5HEC BINDING SITE FOR CHAIN AI - 274
1gu6_A_2661gu6   A HA4HEC BINDING SITE FOR CHAIN AH - 275

Clusters included in this Subclass
CLUSTER: HH.0.22
CLUSTER: HH.1.36
CLUSTER: HH.2.191