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Information on SUBCLASS 1.1.16
Subclass Accession number: 4363
Subclass: 1.1.16 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 9

Average sequence ID (%) : 13.2 +/- 15.1
Average RMSD (Å) : 0.722 +/- 0.130

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: hpXhX
(φψ)-conformation: aapaa
Pattern: [adekq]x[ACFLTV][hnqst][dgnqs][AEGP]xxx[degrs][ailt]x
Conservation:-0.275-1.185-0.1110.0260.1232.819-0.8020.425-0.065-0.017-0.099-0.839
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bgp_*_2481bgp   -252263DLFTNAITRPIVHHHHSTTTHHHHaaaaxaaaaaaa
1dd9_A_1161dd9   A129140QSLQQPVATSARHHHTSGGGHHHHaaaaxaaaaaaa
1f05_A_461f05   A5162AAAQMPAYQELVHHHTSGGGHHHHaaaaxaaaaaaa
1gwu_A_2451gwu   A249260ELFSSPNATDTIHHHHSTTTTTHHaaaaxaaaaaaa
1jni_A_591jni   A5970LNCHSPENSRLSHHHHSTTTHHHHaaaaxaaaaaaa
1mhy_B_2151mhy   B220231IWTTDPIYSGARHHHH-GGGHHHHaaaaxaaaaaaa
1mty_B_2121mty   B217228EWTNGEVYKSARHHHH-STTHHHHaaaaxaaaaaaa
1ohw_A_821ohw   A8697KLVQQPQNVSTFHHHH-GGGHHHHaaaaxaaaaaaa
1v4s_A_2881v4s   A290301EKLIGGKYMGELHHHH-TTTHHHHaaaapaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bgp_*_2481bgp   *     HEMPROTOPORPHYRIN IX CONTAINING FE S - 249
1bgp_*_2481bgp   *     CACALCIUM ION S - 249
1gwu_A_2451gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 246
1gwu_A_2451gwu   A     CACALCIUM ION S - 246
1jni_A_591jni   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 59
1jni_A_591jni   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 60
1jni_A_591jni   A     HEMPROTOPORPHYRIN IX CONTAINING FE C - 61
1jni_A_591jni   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 62
1jni_A_591jni   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 70
1v4s_A_2881v4s   A     AGCALPHA-D-GLUCOSE E - 290

Clusters included in this Subclass
CLUSTER: HH.5.57