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Information on SUBCLASS 1.1.17
Subclass Accession number: 4364
Subclass: 1.1.17 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 9

Average sequence ID (%) : 16.3 +/- 18.4
Average RMSD (Å) : 0.456 +/- 0.230

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: hpphX
(φψ)-conformation: aapaa
Pattern: [adv]xx[FLM]xx[DHNQ]xx[AFGLT][cknrs]x[ilmvy][AIVWY][DEQR]
Conservation:-0.011-0.793-0.7321.821-0.508-0.5451.606-0.377-0.667-0.801-0.299-1.1560.2490.3251.887
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bgp_*_2481bgp   -250264DQDLFTNAITRPIVEHHHHHHSTTTHHHHHaaaaaaxaaaaaaaa
1iyn_A_2221iyn   A224238DAALFEDPSFKVYAEHHHHHHSTTHHHHHHaaaaaaxaaaaaaaa
1m8z_A_11111m8z   A11121126LYTMMKDQYANYVVQHHHHHTSTTHHHHHHaaaaaaxaaaaaaaa
1m8z_A_8891m8z   A889903AYQLMVDVFGNYVIQHHHHHTSTTHHHHHHaaaaaaxaaaaaaaa
1m8z_A_9251m8z   A925939VLSLALQMYGCRVIQHHHHHTSTTHHHHHHaaaaaaxaaaaaaaa
1m8z_A_9971m8z   A9971011VFALSTHPYGCRVIQHHHHHTSTTHHHHHHaaaaaabaaaaaaaa
1oaf_A_2061oaf   A208222DKALLSDPVFRPLVDHHHHHHSTTHHHHHHaaaaaaxaaaaaaaa
1pb7_A_1801pb7   A182196DIYFRRQVELSTMYRHHHHHT-GGGHHHHHaaaaaabaaaaaaaa
1qpa_A_2361qpa   A238252DHLFARDSRTACEWQHHHHHH-TTTHHHHHaaaaaaxaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bgp_*_2481bgp   *     HEMPROTOPORPHYRIN IX CONTAINING FE S - 249
1bgp_*_2481bgp   *     CACALCIUM ION S - 249
1iyn_A_2221iyn   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 223
1oaf_A_2061oaf   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 207
1pb7_A_1801pb7   A     GLYGLYCINE S - 180
1pb7_A_1801pb7   A     GLYGLYCINE V - 181
1qpa_A_2361qpa   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 237
1qpa_A_2361qpa   A     CACALCIUM ION T - 237
1qpa_A_2361qpa   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 238
1qpa_A_2361qpa   A     CACALCIUM ION D - 238
1qpa_A_2361qpa   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 241
1qpa_A_2361qpa   A     CACALCIUM ION F - 241
1qpa_A_2361qpa   A     HTRBETA-HYDROXYTRYPTOPHANE E - 250
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1oaf_A_2061oaf   A AC1HEM BINDING SITE FOR CHAIN AS - 207

Clusters included in this Subclass
CLUSTER: HH.3.300
CLUSTER: HH.4.67
CLUSTER: HH.5.136