Information on SUBCLASS 1.1.52 |
Subclass Accession number: 4399
Subclass: 1.1.52 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 64.7 +/- -14.7 Average RMSD (Å) : 0.167 +/- 0.058 Consensus geometry
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Consensus Sequence: | ApDXR |
(φψ)-conformation: | aapaa |
Pattern: | [QR] | [ST] | [D] | x | [AL] | [FL] | [A] | [HR] | [D] | [PS] | [R] | [T] | [A] | [C] | x | [W] | [Q] |
Conservation: | -0.402 | -0.527 | 0.654 | -1.183 | -0.947 | -0.638 | -0.065 | -0.385 | 0.654 | -0.744 | 0.295 | 0.295 | -0.065 | 1.732 | -1.422 | 2.451 | 0.295 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1aru_*_244 | 1aru | - | 244 | 260 | RSDALLARDSRTACRWQ | HHHHHHHHSTTTHHHHH | aaaaaaaaxaaaaaaaa |
1mn2_*_240 | 1mn2 | - | 240 | 256 | QSDFALAHDPRTACIWQ | HHHHHHHHSTTTHHHHH | aaaaaaaaxaaaaaaaa |
1qpa_A_236 | 1qpa | A | 236 | 252 | QTDHLFARDSRTACEWQ | HHHHHHHH-TTTHHHHH | aaaaaaaaxaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1aru_*_244 | 1aru | * | HEMPROTOPORPHYRIN IX CONTAINING FE | S - 245 |
1aru_*_244 | 1aru | * | CACALCIUM ION | S - 245 |
1aru_*_244 | 1aru | * | HEMPROTOPORPHYRIN IX CONTAINING FE | D - 246 |
1aru_*_244 | 1aru | * | HEMPROTOPORPHYRIN IX CONTAINING FE | L - 249 |
1aru_*_244 | 1aru | * | CACALCIUM ION | L - 249 |
1mn2_*_240 | 1mn2 | * | CACALCIUM ION | S - 241 |
1mn2_*_240 | 1mn2 | * | HEMPROTOPORPHYRIN IX CONTAINING FE | S - 241 |
1mn2_*_240 | 1mn2 | * | HEMPROTOPORPHYRIN IX CONTAINING FE | D - 242 |
1mn2_*_240 | 1mn2 | * | CACALCIUM ION | L - 245 |
1mn2_*_240 | 1mn2 | * | HEMPROTOPORPHYRIN IX CONTAINING FE | L - 245 |
1qpa_A_236 | 1qpa | A | HEMPROTOPORPHYRIN IX CONTAINING FE | T - 237 |
1qpa_A_236 | 1qpa | A | CACALCIUM ION | T - 237 |
1qpa_A_236 | 1qpa | A | HEMPROTOPORPHYRIN IX CONTAINING FE | D - 238 |
1qpa_A_236 | 1qpa | A | CACALCIUM ION | D - 238 |
1qpa_A_236 | 1qpa | A | HEMPROTOPORPHYRIN IX CONTAINING FE | F - 241 |
1qpa_A_236 | 1qpa | A | CACALCIUM ION | F - 241 |
1qpa_A_236 | 1qpa | A | HTRBETA-HYDROXYTRYPTOPHANE | E - 250 |
Clusters included in this Subclass |
CLUSTER: HH.3.44 |