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Information on SUBCLASS 1.1.53
Subclass Accession number: 4400
Subclass: 1.1.53 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 8.3 +/- 11.6
Average RMSD (Å) : 0.667 +/- 0.115

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: XXXpX
(φψ)-conformation: aapaa
Pattern: [ITV][HLV][ADS]x[CST][ET]x[FR][KP]x[FRY]x
Conservation:0.696-0.943-0.049-1.0920.5471.217-0.9430.6601.542-0.1980.249-1.688
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e3d_A_1861e3d   A186197VHDLCERRKHFDHHHH-TTHHHHHaaaaxaaaaaaa
1fi4_A_2141fi4   A215226TVATSELFKERIHHHH-SHHHHHHaaaaxaaaaaaa
1nkz_A_121nkz   A3445ILSHTTWFPAYWHHHH-SHHHHHHaaaabaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e3d_A_1861e3d   A     FS3FE3-S4 CLUSTER V - 186
1e3d_A_1861e3d   A     FS4IRON/SULFUR CLUSTER V - 186
1e3d_A_1861e3d   A     FS4IRON/SULFUR CLUSTER H - 187
1e3d_A_1861e3d   A     FS4IRON/SULFUR CLUSTER D - 188
1e3d_A_1861e3d   A     FS4IRON/SULFUR CLUSTER C - 190
1e3d_A_1861e3d   A     FS4IRON/SULFUR CLUSTER E - 191
1e3d_A_1861e3d   A     FS4IRON/SULFUR CLUSTER R - 192
1e3d_A_1861e3d   A     FS4IRON/SULFUR CLUSTER R - 193
1e3d_A_1861e3d   A     FS4IRON/SULFUR CLUSTER K - 194
1e3d_A_1861e3d   A     FS4IRON/SULFUR CLUSTER H - 195
1e3d_A_1861e3d   A     FS4IRON/SULFUR CLUSTER F - 196
1e3d_A_1861e3d   A     FS4IRON/SULFUR CLUSTER D - 197
1fi4_A_2141fi4   A     MSESELENOMETHIONINE L - 214
1fi4_A_2141fi4   A     MSESELENOMETHIONINE T - 215
1fi4_A_2141fi4   A     MSESELENOMETHIONINE V - 216
1fi4_A_2141fi4   A     MSESELENOMETHIONINE A - 217
1fi4_A_2141fi4   A     MSESELENOMETHIONINE F - 222
1fi4_A_2141fi4   A     MSESELENOMETHIONINE I - 226
1nkz_A_121nkz   A     BOGB-OCTYLGLUCOSIDE I - 14
1nkz_A_121nkz   A     BCLBACTERIOCHLOROPHYLL A I - 14
1nkz_A_121nkz   A     BCLBACTERIOCHLOROPHYLL A G - 15
1nkz_A_121nkz   A     RG1RHODOPIN GLUCOSIDE I - 16
1nkz_A_121nkz   A     BCLBACTERIOCHLOROPHYLL A I - 16
1nkz_A_121nkz   A     BCLBACTERIOCHLOROPHYLL A P - 17
1nkz_A_121nkz   A     BCLBACTERIOCHLOROPHYLL A A - 18
1nkz_A_121nkz   A     RG1RHODOPIN GLUCOSIDE L - 19
1nkz_A_121nkz   A     BCLBACTERIOCHLOROPHYLL A L - 19
1nkz_A_121nkz   A     RG1RHODOPIN GLUCOSIDE L - 20
1nkz_A_121nkz   A     BCLBACTERIOCHLOROPHYLL A L - 20
1nkz_A_121nkz   A     BCLBACTERIOCHLOROPHYLL A G - 21
1nkz_A_121nkz   A     BENBENZAMIDINE G - 21
1nkz_A_121nkz   A     BCLBACTERIOCHLOROPHYLL A S - 22
1nkz_A_121nkz   A     BENBENZAMIDINE S - 22
1nkz_A_121nkz   A     RG1RHODOPIN GLUCOSIDE V - 23
1nkz_A_121nkz   A     BCLBACTERIOCHLOROPHYLL A V - 23
1nkz_A_121nkz   A     BENBENZAMIDINE V - 23
1nkz_A_121nkz   A     BCLBACTERIOCHLOROPHYLL A T - 24
1nkz_A_121nkz   A     BENBENZAMIDINE V - 25
1nkz_A_121nkz   A     RG1RHODOPIN GLUCOSIDE I - 26
1nkz_A_121nkz   A     BCLBACTERIOCHLOROPHYLL A I - 26
1nkz_A_121nkz   A     BENBENZAMIDINE I - 26
1nkz_A_121nkz   A     BCLBACTERIOCHLOROPHYLL A A - 27
1nkz_A_121nkz   A     BCLBACTERIOCHLOROPHYLL A I - 28
1nkz_A_121nkz   A     RG1RHODOPIN GLUCOSIDE L - 29
1nkz_A_121nkz   A     BOGB-OCTYLGLUCOSIDE L - 29
1nkz_A_121nkz   A     BENBENZAMIDINE L - 29
1nkz_A_121nkz   A     RG1RHODOPIN GLUCOSIDE V - 30
1nkz_A_121nkz   A     BCLBACTERIOCHLOROPHYLL A V - 30
1nkz_A_121nkz   A     BCLBACTERIOCHLOROPHYLL A H - 31
1nkz_A_121nkz   A     BOGB-OCTYLGLUCOSIDE L - 32
1nkz_A_121nkz   A     RG1RHODOPIN GLUCOSIDE A - 33
1nkz_A_121nkz   A     BOGB-OCTYLGLUCOSIDE A - 33
1nkz_A_121nkz   A     BOGB-OCTYLGLUCOSIDE I - 34
1nkz_A_121nkz   A     BCLBACTERIOCHLOROPHYLL A I - 34
1nkz_A_121nkz   A     BOGB-OCTYLGLUCOSIDE S - 36
1nkz_A_121nkz   A     BOGB-OCTYLGLUCOSIDE H - 37
1nkz_A_121nkz   A     RG1RHODOPIN GLUCOSIDE T - 39
1nkz_A_121nkz   A     RG1RHODOPIN GLUCOSIDE W - 40
1nkz_A_121nkz   A     BCLBACTERIOCHLOROPHYLL A W - 40
1nkz_A_121nkz   A     RG1RHODOPIN GLUCOSIDE F - 41
1nkz_A_121nkz   A     BCLBACTERIOCHLOROPHYLL A F - 41
1nkz_A_121nkz   A     RG1RHODOPIN GLUCOSIDE A - 43
1nkz_A_121nkz   A     RG1RHODOPIN GLUCOSIDE Y - 44
1nkz_A_121nkz   A     BCLBACTERIOCHLOROPHYLL A Y - 44
1nkz_A_121nkz   A     RG1RHODOPIN GLUCOSIDE W - 45
1nkz_A_121nkz   A     BCLBACTERIOCHLOROPHYLL A W - 45
1nkz_A_121nkz   A     RG1RHODOPIN GLUCOSIDE Q - 46

Clusters included in this Subclass
CLUSTER: HH.3.38