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Information on SUBCLASS 1.2.29
Subclass Accession number: 4447
Subclass: 1.2.29 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 13.3 +/- 12.6
Average RMSD (Å) : 0.600 +/- 0.100

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 90-135 rho (°): 45-90
Consensus Sequence: XXpXX
(φψ)-conformation: aabaa
Pattern: [AE]xx[ASV][DE][EP][FR][ILV][AC][ALP][KS][IY][IL]xxxxxx[CMT]
Conservation:0.208-0.755-0.755-0.3441.8451.158-0.0360.8072.037-0.7550.7710.3851.129-1.248-0.673-0.755-0.919-0.755-1.248-0.097
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a79_A_711a79   A7897ARNVEERLCLKYLVYKDLRTHHHH-TTHHHHHHHHHHHHHaaaabaaaaaaaaaaaaaaa
1ep3_A_2721ep3   A272291ANFADPFVCPKIIDKLPELMHHHH-TTHHHHHHHHHHHHHaaaabaaaaaaaaaaaaaaa
1gwu_A_141gwu   A2544ELRSDPRIAASILRLHFHDCHHHH-TTHHHHHHHHHHHHHaaaabaaaaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a79_A_711a79   A     AUGOLD ION Y - 75
1a79_A_711a79   A     AUGOLD ION R - 79
1a79_A_711a79   A     AUGOLD ION L - 85
1a79_A_711a79   A     AUGOLD ION C - 86
1a79_A_711a79   A     AUGOLD ION L - 87
1a79_A_711a79   A     AUGOLD ION Y - 89
1a79_A_711a79   A     AUGOLD ION L - 90
1ep3_A_2721ep3   A     FMNFLAVIN MONONUCLEOTIDE A - 272
1ep3_A_2721ep3   A     FMNFLAVIN MONONUCLEOTIDE F - 274
1gwu_A_141gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 31
1gwu_A_141gwu   A     CACALCIUM ION R - 31
1gwu_A_141gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 33
1gwu_A_141gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 34
1gwu_A_141gwu   A     CACALCIUM ION A - 34
1gwu_A_141gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 35
1gwu_A_141gwu   A     CACALCIUM ION S - 35
1gwu_A_141gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 36
1gwu_A_141gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 37
1gwu_A_141gwu   A     CACALCIUM ION L - 37
1gwu_A_141gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 38
1gwu_A_141gwu   A     CACALCIUM ION R - 38
1gwu_A_141gwu   A     ACTACETATE ION R - 38
1gwu_A_141gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 41
1gwu_A_141gwu   A     CACALCIUM ION F - 41
1gwu_A_141gwu   A     ACTACETATE ION F - 41
1gwu_A_141gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 42
1gwu_A_141gwu   A     CACALCIUM ION H - 42
1gwu_A_141gwu   A     ACTACETATE ION H - 42
1gwu_A_141gwu   A     CACALCIUM ION D - 43
1gwu_A_141gwu   A     CACALCIUM ION C - 44
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gwu_A_141gwu   A HEMHEM BINDING SITE FOR CHAIN AR - 31
1gwu_A_141gwu   A HEMHEM BINDING SITE FOR CHAIN AA - 34
1gwu_A_141gwu   A HEMHEM BINDING SITE FOR CHAIN AS - 35
1gwu_A_141gwu   A HEMHEM BINDING SITE FOR CHAIN AR - 38
1gwu_A_141gwu   A HEMHEM BINDING SITE FOR CHAIN AF - 41
1gwu_A_141gwu   A AC1ACT BINDING SITE FOR CHAIN AH - 42
1gwu_A_141gwu   A CA1CA BINDING SITE FOR CHAIN AD - 43

Clusters included in this Subclass
CLUSTER: HH.3.190