Information on SUBCLASS 1.2.40 |
Subclass Accession number: 4458
Subclass: 1.2.40 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 2 Average sequence ID (%) : 60.9 +/- 0.0 Average RMSD (Å) : 0.200 +/- 0.000 Consensus geometry
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Consensus Sequence: | XKNcY |
(φψ)-conformation: | aabaa |
Pattern: | [AV] | [EQ] | [Q] | [V] | x | [EK] | [L] | [A] | [GV] | [P] | [L] | x | [K] | [N] | [DN] | [Y] | [G] | [KQ] | [Y] | [L] | [LY] | [K] | [M] |
Conservation: | -1.092 | -0.290 | 0.511 | -0.023 | -1.760 | -0.557 | -0.023 | -0.023 | -1.626 | 1.579 | -0.023 | -1.626 | 0.511 | 1.045 | -0.290 | 1.579 | 1.045 | -0.557 | 1.579 | -0.023 | -0.958 | 0.511 | 0.511 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1h5r_A_266 | 1h5r | A | 266 | 288 | VEQVRKLAVPLIKNNYGQYLYKM | HHHHHHHHGGGTTSHHHHHHHHH | aaaaaaaaaaaaabaaaaaaaaa |
1iin_A_266 | 1iin | A | 266 | 288 | AQQVIELAGPLSKNDYGKYLLKM | HHHHHHHHGGGTTSHHHHHHHHH | aaaaaaaaaaaaabaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1h5r_A_266 | 1h5r | A | THMTHYMIDINE | Y - 284 |
Clusters included in this Subclass |
CLUSTER: HH.5.323 |