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Information on SUBCLASS 1.3.3
Subclass Accession number: 4464
Subclass: 1.3.3 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 36

Average sequence ID (%) : 14.2 +/- 16.6
Average RMSD (Å) : 0.442 +/- 0.179

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXcXX
(φψ)-conformation: aalaa
Pattern: x[afilmv]x[adeknqrs]x[adegknrs]xx[adegknqst]x[acfilmvy]
Conservation:-0.7911.131-0.9830.378-0.3281.418-1.105-0.737-0.188-0.4811.684
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8i_*_951a8i   -98108TMVNLALENACHHHHHT-HHHHaaaaavaaaaa
1aco_*_2741aco   -279289YLSKTGRADIAHHHHTT-HHHHaaaaavaaaaa
1bed_*_661bed   -7585TMIALEVEDKMHHHHTT-HHHHaaaaalaaaaa
1bm8_*_801bm8   -8696LAEKFSVYDQLHHHHTT-HHHHaaaaalaaaaa
1e12_A_1821e12   A186196SASSAGTAEIFHHHHHT-HHHHaaaaavaaaaa
1efd_N_1301efd   N141151MADLLNLQSAAHHHHHT-HHHHaaaaalaaaaa
1emu_A_1331emu   A142152FLKQEGCADLLHHHHTT-THHHaaaaavaaaaa
1eu1_A_5111eu1   A518528LAERLGKGAEFHHHHTT-HHHHaaaaavaaaaa
1fqi_A_3071fqi   A316326FLRKEFSGENLHHHHTT-THHHaaaaavaaaaa
1fvk_A_661fvk   A7888VAMALGVEDKVHHHHHT-HHHHaaaaavaaaaa
1gs4_A_7721gs4   A774784RMHKSRMYSQCHHHHTT-HHHHaaaaavaaaaa
1hg4_A_3741hg4   A376386SAIKAGVSAIFHHHHHT-HHHHaaaaavaaaaa
1i36_A_1541i36   A179189AAHRLGLEEDVHHHHTT-HHHHaaaaavaaaaa
1ia6_A_821ia6   A8494SFDATGNTTKMHHHHTT-HHHHaaaaavaaaaa
1io7_A_2311io7   A233243RIREENLYLKAHHHHHT-HHHHaaaaalaaaaa
1iq8_A_2971iq8   A321331QAIKEGELWRLHHHHHT-HHHHaaaaavaaaaa
1j8f_A_3241j8f   A331341LAELLGWKKELHHHHTT-HHHHaaaaavaaaaa
1j97_A_211j97   A2535IAREAGVEEEVHHHHTT-HHHHaaaaavaaaaa
1jhg_A_91jhg   A2838NAYQNDLHLPLHHHHTT-HHHHaaaaalaaaaa
1jj7_A_6091jj7   A615625AAVKSGAHSFIHHHHHT-HHHHaaaaavaaaaa
1kqf_C_921kqf   C93103VEVLKGNEHKVHHHHTT-HHHHaaaaavaaaaa
1l5w_A_741l5w   A7787NLLNLGWYQDVHHHHHT-HHHHaaaaavaaaaa
1mna_A_111mna   A1828QAVEDDRYGEFHHHHTT-HHHHaaaaavaaaaa
1mvc_A_3341mvc   A336346SAHSAGVGAIFHHHHTT-HHHHaaaaavaaaaa
1nf1_A_12361nf1   A12461256LFDSRHLLYQLHHHTTT-HHHHaaaaavaaaaa
1o6l_A_1851o6l   A187197VIIAKDEVAHTHHHHTT-HHHHaaaaalaaaaa
1o94_A_5661o94   A567577YMHFTLEYPNMHHHHTT-HHHHaaaaavaaaaa
1ozj_A_251ozj   A4151KLKKTGQLDELHHHHTT-HHHHaaaaalaaaaa
1q1a_A_2701q1a   A277287LVEELGWQEDFHHHHHT-HHHHaaaaavaaaaa
1q1s_C_4341q1s   C450460AAEKLGETEKLHHHTTT-HHHHaaaaalaaaaa
1qwg_A_751qwg   A8090YAYSKGKFDEFHHHHTT-HHHHaaaaavaaaaa
1sbp_*_2271sbp   -229239VVEKKDTKAVAHHHHHT-HHHHaaaaalaaaaa
1sw6_A_3631sw6   A363373NNYDSGTFEALHHHHTT-HHHHaaaaalaaaaa
1tmo_*_5201tmo   -527537FAAVLGKEKEYHHHHTT-HHHHaaaaavaaaaa
1trr_A_141trr   A2838NAYQNDLHLPLHHHHHT-HHHHaaaaalaaaaa
1wer_*_7491wer   -759769IFLHEKLESLLHHHHTT-HHHHaaaaavaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e12_A_1821e12   A     RETRETINAL W - 207
1e12_A_1821e12   A     RETRETINAL L - 208
1e12_A_1821e12   A     RETRETINAL Y - 210
1e12_A_1821e12   A     RETRETINAL P - 211
1e12_A_1821e12   A     RETRETINAL W - 214
1emu_A_1331emu   A     GOLGLYCEROL Q - 133
1emu_A_1331emu   A     GOLGLYCEROL D - 134
1emu_A_1331emu   A     GOLGLYCEROL I - 136
1emu_A_1331emu   A     GOLGLYCEROL S - 137
1eu1_A_5111eu1   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE D - 511
1eu1_A_5111eu1   A     GLCGLUCOSE D - 513
1eu1_A_5111eu1   A     CDCADMIUM ION R - 521
1fqi_A_3071fqi   A     MSESELENOMETHIONINE K - 308
1fqi_A_3071fqi   A     MSESELENOMETHIONINE S - 312
1fqi_A_3071fqi   A     MSESELENOMETHIONINE F - 313
1fqi_A_3071fqi   A     MSESELENOMETHIONINE L - 317
1fqi_A_3071fqi   A     MSESELENOMETHIONINE N - 325
1fqi_A_3071fqi   A     MSESELENOMETHIONINE L - 326
1fqi_A_3071fqi   A     MSESELENOMETHIONINE W - 329
1gs4_A_7721gs4   A     PO4PHOSPHATE ION K - 777
1gs4_A_7721gs4   A     PO4PHOSPHATE ION R - 779
1gs4_A_7721gs4   A     ZK59ALPHA-FLUOROCORTISOL M - 780
1gs4_A_7721gs4   A     ZK59ALPHA-FLUOROCORTISOL M - 787
1hg4_A_3741hg4   A     LPP2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE S - 376
1hg4_A_3741hg4   A     LPP2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE A - 377
1hg4_A_3741hg4   A     LPP2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE K - 379
1hg4_A_3741hg4   A     LPP2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE A - 380
1hg4_A_3741hg4   A     LPP2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE G - 381
1hg4_A_3741hg4   A     LPP2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE V - 382
1hg4_A_3741hg4   A     LPP2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE I - 385
1hg4_A_3741hg4   A     LPP2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE F - 386
1hg4_A_3741hg4   A     LPP2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE I - 389
1i36_A_1541i36   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE K - 159
1io7_A_2311io7   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 248
1iq8_A_2971iq8   A     ZNZINC ION H - 307
1iq8_A_2971iq8   A     ZNZINC ION N - 308
1iq8_A_2971iq8   A     ZNZINC ION W - 310
1iq8_A_2971iq8   A     ZNZINC ION V - 311
1j97_A_211j97   A     BFDASPARTATE BERYLLIUM TRIFLUORIDE M - 43
1j97_A_211j97   A     MGMAGNESIUM ION M - 43
1mvc_A_3341mvc   A     BM64-[2-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTHALEN-2-YL)-[1,3]DIOXOLAN-2-YL]-BENZOIC ACID V - 342
1mvc_A_3341mvc   A     BM64-[2-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTHALEN-2-YL)-[1,3]DIOXOLAN-2-YL]-BENZOIC ACID I - 345
1mvc_A_3341mvc   A     BM64-[2-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTHALEN-2-YL)-[1,3]DIOXOLAN-2-YL]-BENZOIC ACID F - 346
1mvc_A_3341mvc   A     BM64-[2-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTHALEN-2-YL)-[1,3]DIOXOLAN-2-YL]-BENZOIC ACID V - 349
1o6l_A_1851o6l   A     TPOPHOSPHOTHREONINE H - 196
1o6l_A_1851o6l   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER E - 200
1o6l_A_1851o6l   A     MNMANGANESE (II) ION E - 200
1q1a_A_2701q1a   A     OAD2'-O-ACETYL ADENOSINE-5-DIPHOSPHORIBOSE S - 270
1q1a_A_2701q1a   A     OAD2'-O-ACETYL ADENOSINE-5-DIPHOSPHORIBOSE D - 271
1tmo_*_5201tmo   *     2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER D - 520
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gs4_A_7721gs4   A AC2PO4 BINDING SITE FOR CHAIN AK - 777
1gs4_A_7721gs4   A AC2PO4 BINDING SITE FOR CHAIN AR - 779
1jhg_A_91jhg   A WBSL-TRYPTOPHAN BINDING SITE PLEASE NOTE THAT LEU 41 AND THR 44 FORM PART OF THE BINDING SITE ON THE SUBUNIT OF REPRESSOR THAT MAY BE GENERATED BY THE INDICATED SYMMETRY OPERATOR.L - 41

Clusters included in this Subclass
CLUSTER: HH.1.85
CLUSTER: HH.2.28
CLUSTER: HH.3.25
CLUSTER: HH.4.157
CLUSTER: HH.4.29