Information on SUBCLASS 1.3.4 |
Subclass Accession number: 4465
Subclass: 1.3.4 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 30 Average sequence ID (%) : 13.9 +/- 15.7 Average RMSD (Å) : 0.520 +/- 0.194 Consensus geometry
|
Consensus Sequence: | pXchX |
(φψ)-conformation: | aalaa |
Pattern: | x | x | [ailmvy] | [AFILMPVWY] | x | [adegknqrs] | x | [dgnq] | [acfgilvwy] | x | [adenpqst] | x | [afilpvy] |
Conservation: | -0.519 | -0.578 | -0.368 | 1.248 | -0.698 | 0.235 | -0.987 | 2.484 | -0.470 | -0.442 | 0.816 | -0.941 | 0.218 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ee4_A_123 | 1ee4 | A | 123 | 135 | IDVVIQAGVVPRL | HHHHHHTT-HHHH | aaaaaaavaaaaa |
1ee4_A_205 | 1ee4 | A | 208 | 220 | RDYVLQCNAMEPI | HHHHHHTT-HHHH | aaaaaaavaaaaa |
1ee4_A_331 | 1ee4 | A | 334 | 346 | TQVVINAGVLPAL | HHHHHHTTHHHHH | aaaaaaavaaaaa |
1ee4_A_373 | 1ee4 | A | 376 | 388 | IQAVIDANLIPPL | HHHHHHTT-HHHH | aaaaaaalaaaaa |
1ee4_A_418 | 1ee4 | A | 421 | 433 | IRYLVSQGCIKPL | HHHHHHTT-HHHH | aaaaaaavaaaaa |
1g3j_C_225 | 1g3j | C | 228 | 240 | LLAIFKSGGIPAL | HHHHHHTT-HHHH | aaaaaaavaaaaa |
1iat_A_61 | 1iat | A | 68 | 80 | VDLAKSRGVEAAR | HHHHHHTTHHHHH | aaaaaaavaaaaa |
1io7_A_211 | 1io7 | A | 222 | 234 | VIDFTRFNLWQRI | HHHHHHTT-HHHH | aaaaaaalaaaaa |
1jdh_A_478 | 1jdh | A | 482 | 494 | QNAVRLHYGLPVV | HHHHHHTT-HHHH | aaaaaaalaaaaa |
1jdh_A_584 | 1jdh | A | 587 | 599 | RIVIRGLNTIPLF | HHHHHHTT-HHHH | aaaaaaalaaaaa |
1jdh_A_625 | 1jdh | A | 628 | 640 | AEAIEAEGATAPL | HHHHHHTT-HHHH | aaaaaaavaaaaa |
1jvn_A_53 | 1jvn | A | 57 | 69 | VDNLFNRGFEKPI | HHHHHHTT-HHHH | aaaaaaavaaaaa |
1k9v_F_354 | 1k9v | F | 358 | 370 | MRRLRENDLIDFV | HHHHHHTT-HHHH | aaaaaaalaaaaa |
1knz_A_39 | 1knz | A | 51 | 63 | DFVMDDSGVKNNP | HHHHHHTSTTHHH | aaaaaaavaaaaa |
1l3a_A_224 | 1l3a | A | 236 | 248 | FVMPYLLGWHTAV | HHHHHHTTHHHHH | aaaaaaavaaaaa |
1ld9_A_140 | 1ld9 | A | 144 | 156 | RRKWEQAGAAEYY | HHHHHHTTSHHHH | aaaaaaavaaaaa |
1mhc_A_138 | 1mhc | A | 144 | 156 | KSRLESAGTAEYF | HHHHHHH-THHHH | aaaaaaavaaaaa |
1mum_A_270 | 1mum | A | 271 | 283 | NELYESINYYQYE | HHHHHHTTTHHHH | aaaaaaalaaaaa |
1nrj_A_96 | 1nrj | A | 110 | 122 | LKLWNSLHLSESI | HHHHHHTTHHHHH | aaaaaaalaaaaa |
1ohw_A_358 | 1ohw | A | 368 | 380 | INIIKREDLLSNA | HHHHHHTTHHHHH | aaaaaaalaaaaa |
1q1s_C_112 | 1q1s | C | 112 | 124 | IDNIIRAGLIPKF | HHHHHHTT-HHHH | aaaaaaavaaaaa |
1q1s_C_152 | 1q1s | C | 155 | 167 | TKAVVDGGAIPAF | HHHHHHTTHHHHH | aaaaaaavaaaaa |
1q1s_C_194 | 1q1s | C | 197 | 209 | RDLVIKHGAIDPL | HHHHHHTT-HHHH | aaaaaaavaaaaa |
1q1s_C_367 | 1q1s | C | 370 | 382 | IQQVVNHGLVPFL | HHHHHHTT-HHHH | aaaaaaavaaaaa |
1q1s_C_410 | 1q1s | C | 413 | 425 | IVYLVHCGIIEPL | HHHHHHTT-HHHH | aaaaaaavaaaaa |
1q1s_C_457 | 1q1s | C | 461 | 473 | SIMIEECGGLDKI | HHHHHHTTSHHHH | aaaaaaavaaaaa |
1r0w_A_514 | 1r0w | A | 518 | 530 | KSVVKACQLQQDI | HHHHHHTT-HHHH | aaaaaaavaaaaa |
1s0a_A_314 | 1s0a | A | 323 | 335 | SLAILESGDWQQQ | HHHHHHT-HHHHH | aaaaaaavaaaaa |
2dkb_*_308 | 2dkb | - | 318 | 330 | LDVVQRDGLVARA | HHHHHHTTHHHHH | aaaaaaavaaaaa |
2oat_A_327 | 2oat | A | 337 | 349 | LEVLEEENLAENA | HHHHHHTTHHHHH | aaaaaaalaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1io7_A_211 | 1io7 | A | HEMPROTOPORPHYRIN IX CONTAINING FE | N - 211 |
1io7_A_211 | 1io7 | A | HEMPROTOPORPHYRIN IX CONTAINING FE | T - 213 |
1io7_A_211 | 1io7 | A | HEMPROTOPORPHYRIN IX CONTAINING FE | T - 214 |
1io7_A_211 | 1io7 | A | HEMPROTOPORPHYRIN IX CONTAINING FE | L - 217 |
1jvn_A_53 | 1jvn | A | 143S-2,3-DIHYDRO-5-GLYCIN-2-YL-ISOXAZOL-3-YL-CYSTEINE | Y - 53 |
1jvn_A_53 | 1jvn | A | NINICKEL (II) ION | Y - 53 |
Clusters included in this Subclass |
CLUSTER: HH.2.31 |
CLUSTER: HH.3.55 |
CLUSTER: HH.4.26 |