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Information on SUBCLASS 1.3.8
Subclass Accession number: 4469
Subclass: 1.3.8 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 9

Average sequence ID (%) : 9.6 +/- 13.3
Average RMSD (Å) : 0.600 +/- 0.250

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXXXX
(φψ)-conformation: aalaa
Pattern: [afilvy]xxx[flmy]x[adekt][iklmt][egkn]xx[ehnqrs]x[FKLV][DEGKS]xx
Conservation:0.300-1.391-0.802-0.9361.7520.5370.343-0.2430.1420.159-0.7320.799-0.1720.9781.808-1.601-0.941
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b0x_A_9161b0x   A916932VGDWLQAIKMDRYKDNFHHHHHHHTT-GGGHHHHaaaaaaaalaaaaaaaa
1b4f_A_141b4f   A1430VDEWLEAIKMGQYKESFHHHHHHHTT-GGGHHHHaaaaaaaavaaaaaaaa
1fqi_A_3071fqi   A313329FQHFLRKEFSGENLGFWHHHHHHHTT-THHHHHHaaaaaaaavaaaaaaaa
1j79_A_2741j79   A278294YATVFEEMNALQHFEAFHHHHHHHTT-GGGHHHHaaaaaaaalaaaaaaaa
1m7v_A_11m7v   A1127IAECYQELGKEEEVKDRHHHHHHHHT-GGGHHHHaaaaaaaavaaaaaaaa
1n1j_A_1131n1j   A116132ILFAMSTLGFDSYVEPLHHHHHHHTT-GGGHHHHaaaaaaaagaaaaaaaa
1pq1_A_1371pq1   A150166LCVESVDKEMQVLVSRIHHHHHHHTT-TTHHHHHaaaaaaaavaaaaaaaa
1pvy_A_1161pvy   A125141KLAELVKEGRFNDFGKEHHHHHHHTT-GGGHHHHaaaaaaaalaaaaaaaa
1qlv_A_381qlv   A4258ADYYFRVTKSEHMVDLKHHHHHHHTT-TT-HHHHaaaaaaaalaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1fqi_A_3071fqi   A     MSESELENOMETHIONINE K - 308
1fqi_A_3071fqi   A     MSESELENOMETHIONINE S - 312
1fqi_A_3071fqi   A     MSESELENOMETHIONINE F - 313
1fqi_A_3071fqi   A     MSESELENOMETHIONINE L - 317
1fqi_A_3071fqi   A     MSESELENOMETHIONINE N - 325
1fqi_A_3071fqi   A     MSESELENOMETHIONINE L - 326
1fqi_A_3071fqi   A     MSESELENOMETHIONINE W - 329

Clusters included in this Subclass
CLUSTER: HH.5.154
CLUSTER: HH.5.156
CLUSTER: HH.6.252
CLUSTER: HH.6.82