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Information on SUBCLASS 2.1.9
Subclass Accession number: 4509
Subclass: 2.1.9 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 12

Average sequence ID (%) : 9.8 +/- 14.2
Average RMSD (Å) : 0.525 +/- 0.214

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: pXhXXX
(φψ)-conformation: aappaa
Pattern: [cilvy]x[eknqrst]x[acgm][degps]x[adegkr]xx
Conservation:1.362-1.0100.921-0.0181.619-0.977-0.586-0.118-0.036-1.157
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ee4_A_3851ee4   A391400LLEVAEDKTKHHHHS-HHHHaaaaxxaaaa
1elk_A_641elk   A7786CVKNCGHRFHHHHHS-HHHHaaaabbaaaa
1ete_A_451ete   A6069LKTVAGSKMQHHTTS-HHHHaaaabxaaaa
1j0m_A_3181j0m   A332341LAQFAPAPHAHHTTS-HHHHaaaNpxaaaa
1m8z_A_10061m8z   A10131022ILEHCLPDQTHHHHS-HHHHaaaaxxaaaa
1mhq_A_761mhq   A8998CMNHCGEKFHHHHHS-HHHHaaaaxxaaaa
1mlw_A_1681mlw   A185194YPTHACREYLHHHHB-HHHHaaaaxxaaaa
1na7_A_151na7   A1524VNTHRPREYWHHHHS-HHHHaaaaxpaaaa
1qgr_A_4491qgr   A458467EGLSAEPRVAHHTTS-HHHHaaaaxpaaaa
1r2j_A_691r2j   A8594VQRLGDAGQRHHHHS-HHHHaaaapxaaaa
1rtw_A_1001rtw   A112121VASLGSFLEGHHHHS-HHHHaaaaxxaaaa
1rwh_A_3051rwh   A319328LARAMDPATAHHTTS-HHHHaaaaxxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ete_A_451ete   A     ZNZINC ION Q - 54
1ete_A_451ete   A     ZNZINC ION E - 58
1ete_A_451ete   A     ZNZINC ION K - 61
1ete_A_451ete   A     ZNZINC ION E - 73
1ete_A_451ete   A     ZNZINC ION N - 76
1r2j_A_691r2j   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 77
1r2j_A_691r2j   A     FADFLAVIN-ADENINE DINUCLEOTIDE M - 80
1rtw_A_1001rtw   A     MP5(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL DIHYDROGEN PHOSPHATE Y - 105
1rtw_A_1001rtw   A     MSESELENOMETHIONINE F - 118
1rtw_A_1001rtw   A     MSESELENOMETHIONINE L - 125
1rtw_A_1001rtw   A     MSESELENOMETHIONINE E - 128
1rtw_A_1001rtw   A     MP5(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL DIHYDROGEN PHOSPHATE E - 128
1rtw_A_1001rtw   A     MSESELENOMETHIONINE E - 129
1rtw_A_1001rtw   A     MP5(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL DIHYDROGEN PHOSPHATE E - 129
1rtw_A_1001rtw   A     MP5(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL DIHYDROGEN PHOSPHATE A - 131
1rtw_A_1001rtw   A     MP5(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL DIHYDROGEN PHOSPHATE Y - 132
1rtw_A_1001rtw   A     MSESELENOMETHIONINE W - 136
1rtw_A_1001rtw   A     MSESELENOMETHIONINE V - 139
1rwh_A_3051rwh   A     GAD2,6-ANHYDRO-3-DEOXY-D-ERYTHRO-HEX-2-ENONIC ACID L - 308
1rwh_A_3051rwh   A     GAD2,6-ANHYDRO-3-DEOXY-D-ERYTHRO-HEX-2-ENONIC ACID S - 311
1rwh_A_3051rwh   A     GOLGLYCEROL E - 314

Clusters included in this Subclass
CLUSTER: HH.2.127
CLUSTER: HH.3.105
CLUSTER: HH.5.114