ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.1.11

Subclass Accession number: 4511
Subclass: 2.1.11

PSSM

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 10

Average sequence ID (%) : 12.6 +/- 15.1
Average RMSD (Å) : 0.540 +/- 0.117

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	XXhXXp
(φψ)-conformation:	aappaa

Pattern:	[ailvw]	x	[ADEQ]	x	[cgilt]	[dgpst]	x	[adeqrs]	x	[AFIKLV]	[aekrs]	[ekqry]
Conservation:	-0.135	-1.283	1.573	-0.846	-1.902	0.575	-0.274	0.704	0.230	0.983	0.706	-0.331

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a59_*_36	1a59	-	39	50	LAAKCSFEQVAY	HHHH--HHHHHH	aaaabxaaaaaa
1avs_A_10	1avs	A	10	21	ARAFLSEEMIAE	HHHHS-HHHHHH	aaaaxxaaaaaa
1b3u_A_388	1b3u	A	390	401	VNEVIGIRQLSQ	HHHHS-HHHHHH	aaaabxaaaaaa
1bf6_A_92	1bf6	A	92	103	HVATRSVQELAQ	HHHHS-HHHHHH	aaaaxxaaaaaa
1buc_A_98	1buc	A	101	112	IWQFGTEAQKEK	HHHH--HHHHHH	aaaaxxaaaaaa
1h32_B_67	1h32	B	67	78	VAARYPEAMIRG	HHHHS-HHHHHH	aaaabxaaaaaa
1j33_A_218	1j33	A	222	233	AAEVGGIELVAI	HHHHS-HHHHHH	aaaaxbaaaaaa
1jtv_A_200	1jtv	A	203	214	VLDRTDIHTFHR	HHHTS-HHHHHH	aaaabxaaaaaa
1pva_A_2	1pva	A	2	13	AKDLLKADDIKK	HHHHS-HHHHHH	aaaabxaaaaaa
1q44_A_297	1q44	A	297	308	WRDTLSESLAEE	HHHHS-HHHHHH	aaaaxpaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1avs_A_10	1avs	A	CACALCIUM ION	F - 29
1bf6_A_92	1bf6	A	GOLGLYCEROL	H - 92
1bf6_A_92	1bf6	A	GOLGLYCEROL	R - 96
1bf6_A_92	1bf6	A	GOLGLYCEROL	E - 104
1h32_B_67	1h32	B	HECHEME C	V - 67
1h32_B_67	1h32	B	HECHEME C	R - 70
1h32_B_67	1h32	B	HECHEME C	Y - 71
1h32_B_67	1h32	B	HECHEME C	I - 76
1h32_B_67	1h32	B	HECHEME C	I - 79
1h32_B_67	1h32	B	HECHEME C	L - 80
1jtv_A_200	1jtv	A	TESTESTOSTERONE	Y - 218
1jtv_A_200	1jtv	A	TESTESTOSTERONE	H - 221
1jtv_A_200	1jtv	A	TESTESTOSTERONE	S - 222
1jtv_A_200	1jtv	A	TESTESTOSTERONE	K - 223
1jtv_A_200	1jtv	A	TESTESTOSTERONE	V - 225
1jtv_A_200	1jtv	A	TESTESTOSTERONE	F - 226

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1h32_B_67	1h32	B	HB1HEC BINDING SITE FOR CHAIN B	R - 70
1h32_B_67	1h32	B	HB1HEC BINDING SITE FOR CHAIN B	Y - 71
1h32_B_67	1h32	B	HB1HEC BINDING SITE FOR CHAIN B	I - 79

Clusters included in this Subclass

CLUSTER: HH.2.70