ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.1.26

Subclass Accession number: 4526
Subclass: 2.1.26

PSSM

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 5

Average sequence ID (%) : 4.0 +/- 8.0
Average RMSD (Å) : 0.500 +/- 0.071

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	XXXppp
(φψ)-conformation:	aappaa

Pattern:	[HILV]	[cdnw]	x	x	[grs]	[EPST]	[ekn]	[ADEQS]	x	[ekqw]
Conservation:	1.123	-1.667	-0.455	-0.954	-0.561	1.237	0.645	1.186	-0.170	-0.383

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bf6_A_92	1bf6	A	92	101	HVATRSVQEL	HHHHS-HHHH	aaaaxxaaaa
1buc_A_98	1buc	A	101	110	IWQFGTEAQK	HHHH--HHHH	aaaaxxaaaa
1m2r_A_15	1m2r	A	15	24	VNVLRPKEYW	HHHHS-HHHH	aaaabwaaaa
1n00_A_66	1n00	A	70	79	LDKELSNDFE	HHHHS-HHHH	aaaaxxaaaa
1n1c_A_145	1n1c	A	146	155	LCCHSENSVQ	HHHHS-HHHH	aaaabxaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1bf6_A_92	1bf6	A	GOLGLYCEROL	H - 92
1bf6_A_92	1bf6	A	GOLGLYCEROL	R - 96
1bf6_A_92	1bf6	A	GOLGLYCEROL	E - 104
1n1c_A_145	1n1c	A	MSESELENOMETHIONINE	H - 145
1n1c_A_145	1n1c	A	MSESELENOMETHIONINE	L - 146
1n1c_A_145	1n1c	A	MSESELENOMETHIONINE	C - 147
1n1c_A_145	1n1c	A	MSESELENOMETHIONINE	C - 148
1n1c_A_145	1n1c	A	MSESELENOMETHIONINE	V - 154
1n1c_A_145	1n1c	A	MSESELENOMETHIONINE	Q - 155
1n1c_A_145	1n1c	A	MSESELENOMETHIONINE	L - 156
1n1c_A_145	1n1c	A	MSESELENOMETHIONINE	F - 158
1n1c_A_145	1n1c	A	MSESELENOMETHIONINE	L - 159
1n1c_A_145	1n1c	A	MSESELENOMETHIONINE	C - 162

Clusters included in this Subclass

CLUSTER: HH.3.120