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Information on SUBCLASS 2.1.41
Subclass Accession number: 4541
Subclass: 2.1.41 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 7.1 +/- 10.1
Average RMSD (Å) : 0.933 +/- 0.115

Consensus geometry
d (Å): 15 delta (°): 45-90 theta (°): 45-90 rho (°): 0-45
Consensus Sequence: XpXphX
(φψ)-conformation: aappaa
Pattern: [ILW]xx[HKP][MRY][FGY][ARS][NS]x[QST][AFV][AE][DGK][AL]
Conservation:0.254-1.474-1.1280.082-0.4370.254-0.0912.498-0.9550.427-0.6100.900-0.4370.715
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dmt_A_1731dmt   A173186WEQKYGASWTAEKAHHHHTTTT--HHHHaaaaaaaaxbaaaa
1k3x_A_1361k3x   A143156LLSPRFRNRQFAGLHHSTTTTTS-HHHHaaxaaaaaxxaaaa
1ux5_A_14231ux5   A14311444INLHMYSSLSVADLHHTGGGTTS-HHHHaaaaaaaabxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dmt_A_1731dmt   A     NAGN-ACETYL-D-GLUCOSAMINE T - 182
1dmt_A_1731dmt   A     NAGN-ACETYL-D-GLUCOSAMINE E - 184
1dmt_A_1731dmt   A     NAGN-ACETYL-D-GLUCOSAMINE K - 185
1k3x_A_1361k3x   A     GOLGLYCEROL E - 137
1k3x_A_1361k3x   A     GOLGLYCEROL K - 140
1k3x_A_1361k3x   A     GOLGLYCEROL R - 147
1k3x_A_1361k3x   A     GOLGLYCEROL F - 148
1k3x_A_1361k3x   A     GOLGLYCEROL R - 151

Clusters included in this Subclass
CLUSTER: HH.7.122