Logo
Information on SUBCLASS 2.2.14
Subclass Accession number: 4575
Subclass: 2.2.14 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 2.2 +/- 4.6
Average RMSD (Å) : 0.733 +/- 0.058

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXXpXX
(φψ)-conformation: aalpaa
Pattern: x[EHT][EFM][KSW][AFV]x[FKL][ANR][DES][EFM][DTV][GLP][GIL][KMR][AI]
Conservation:-0.6150.704-0.427-0.050-0.050-0.238-0.6150.1392.024-0.427-0.238-1.746-1.1811.2701.447
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1k9x_A_4441k9x   A444458FEEKVAKAEFDPIKAHHHHHHHT--HHHHHaaaaaaavxaaaaaa
1msw_D_5411msw   D544558QHFSAMLRDEVGGRAHHHHHHHT-TTHHHHaaaaaaalxaaaaaa
1v54_C_161v54   C3145LTMWFHFNSMTLLMIHHHHHHHS--HHHHHaaaaaaalbaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1v54_C_161v54   C     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE W - 16
1v54_C_161v54   C     CHDCHOLIC ACID L - 18
1v54_C_161v54   C     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE G - 20
1v54_C_161v54   C     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE A - 21
1v54_C_161v54   C     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE S - 23
1v54_C_161v54   C     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE A - 24
1v54_C_161v54   C     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE M - 27
1v54_C_161v54   C     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE T - 28
1v54_C_161v54   C     PEK(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8, 11,14-TETRAENOATE L - 31
1v54_C_161v54   C     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE L - 31
1v54_C_161v54   C     PEK(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8, 11,14-TETRAENOATE W - 34
1v54_C_161v54   C     PEK(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8, 11,14-TETRAENOATE F - 35
1v54_C_161v54   C     CDLCARDIOLIPIN T - 48
1v54_C_161v54   C     CDLCARDIOLIPIN N - 50
1v54_C_161v54   C     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE N - 50
1v54_C_161v54   C     CDLCARDIOLIPIN M - 51
1v54_C_161v54   C     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE M - 51
1v54_C_161v54   C     CDLCARDIOLIPIN L - 52
1v54_C_161v54   C     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE T - 53
1v54_C_161v54   C     CDLCARDIOLIPIN M - 54
1v54_C_161v54   C     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE M - 54
1v54_C_161v54   C     CDLCARDIOLIPIN Y - 55
1v54_C_161v54   C     CDLCARDIOLIPIN Q - 56
1v54_C_161v54   C     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE W - 57
1v54_C_161v54   C     CDLCARDIOLIPIN W - 58
1v54_C_161v54   C     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE W - 58
1v54_C_161v54   C     CDLCARDIOLIPIN R - 59
1v54_C_161v54   C     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE R - 59
1v54_C_161v54   C     CDLCARDIOLIPIN D - 60
1v54_C_161v54   C     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE D - 60
1v54_C_161v54   C     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE V - 61
1v54_C_161v54   C     CDLCARDIOLIPIN I - 62
1v54_C_161v54   C     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE I - 62
1v54_C_161v54   C     CDLCARDIOLIPIN R - 63
1v54_C_161v54   C     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE E - 64
1v54_C_161v54   C     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE S - 65

Clusters included in this Subclass
CLUSTER: HH.4.309