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PDB code:

Information on SUBCLASS 2.3.5

Subclass Accession number: 4583 Subclass: 2.3.5 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 10 Average sequence ID (%) : 11.1 +/- 12.9 Average RMSD (Å) : 0.900 +/- 0.133 Consensus geometry d (Å): 9 delta (°): 45-90 theta (°): 45-90 rho (°): 225-270

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1feh_A_514	1feh	A	516	526	DLEKVDIKKVR	HHHHS-HHHHH	aaaabxaaaaa
1gcv_B_5	1gcv	B	14	24	TFQGTDMKTVV	HHHHS-HHHHH	aaaabxaaaaa
1je6_A_48	1je6	A	50	60	AEDVLGAETWD	HHHHS-HHHHH	aaaaxxaaaaa
1jkv_A_97	1jkv	A	100	110	TMAGMDPEHSL	HHHHS-HHHHH	aaaaxxaaaaa
1kfi_A_207	1kfi	A	213	223	MQKLFDFDLLK	HHHHS-HHHHH	aaaabxaaaaa
1khc_A_290	1khc	A	290	300	FSQHFNLATFN	HHHH--HHHHH	aaaaxbaaaaa
1ogl_A_33	1ogl	A	33	43	WRQIRHVDDWA	HHHH--HHHHH	aaaaxbaaaaa
1ppr_M_101	1ppr	M	111	121	VSKITDPKVPA	HHHHS-TTHHH	aaaaxxaaaaa
1ppr_M_263	1ppr	M	273	283	MAGVTDTSIPL	HHHH--THHHH	aaaabpaaaaa
2a0b_*_658	2a0b	-	659	669	SEALLDIPMLE	HHHHS-HHHHH	aaaabxaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1gcv_B_5	1gcv	B	HEMPROTOPORPHYRIN IX CONTAINING FE	M - 31
1gcv_B_5	1gcv	B	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 32
1khc_A_290	1khc	A	UNXUNKNOWN ATOM OR ION	F - 290
1khc_A_290	1khc	A	UNXUNKNOWN ATOM OR ION	S - 291
1khc_A_290	1khc	A	UNXUNKNOWN ATOM OR ION	Q - 292
1khc_A_290	1khc	A	UNXUNKNOWN ATOM OR ION	L - 296
1khc_A_290	1khc	A	UNXUNKNOWN ATOM OR ION	A - 297
1khc_A_290	1khc	A	UNXUNKNOWN ATOM OR ION	N - 300
1ppr_M_101	1ppr	M	PIDPERIDININ	E - 101
1ppr_M_101	1ppr	M	PIDPERIDININ	V - 104
1ppr_M_101	1ppr	M	PIDPERIDININ	M - 105
1ppr_M_101	1ppr	M	PIDPERIDININ	V - 107
1ppr_M_101	1ppr	M	DGDDIGALACTOSYL DIACYL GLYCEROL (DGDG)	V - 107
1ppr_M_101	1ppr	M	CLACHLOROPHYLL A	Y - 108
1ppr_M_101	1ppr	M	PIDPERIDININ	Y - 108
1ppr_M_101	1ppr	M	DGDDIGALACTOSYL DIACYL GLYCEROL (DGDG)	Y - 108
1ppr_M_101	1ppr	M	DGDDIGALACTOSYL DIACYL GLYCEROL (DGDG)	V - 111
1ppr_M_101	1ppr	M	DGDDIGALACTOSYL DIACYL GLYCEROL (DGDG)	S - 112
1ppr_M_101	1ppr	M	DGDDIGALACTOSYL DIACYL GLYCEROL (DGDG)	K - 113
1ppr_M_101	1ppr	M	PIDPERIDININ	I - 114
1ppr_M_101	1ppr	M	DGDDIGALACTOSYL DIACYL GLYCEROL (DGDG)	I - 114
1ppr_M_101	1ppr	M	DGDDIGALACTOSYL DIACYL GLYCEROL (DGDG)	T - 115
1ppr_M_101	1ppr	M	PIDPERIDININ	D - 116
1ppr_M_101	1ppr	M	PIDPERIDININ	K - 118
1ppr_M_101	1ppr	M	PIDPERIDININ	V - 119
1ppr_M_101	1ppr	M	DGDDIGALACTOSYL DIACYL GLYCEROL (DGDG)	V - 119
1ppr_M_101	1ppr	M	PIDPERIDININ	P - 120
1ppr_M_101	1ppr	M	DGDDIGALACTOSYL DIACYL GLYCEROL (DGDG)	P - 120
1ppr_M_101	1ppr	M	PIDPERIDININ	A - 121
1ppr_M_101	1ppr	M	PIDPERIDININ	Y - 122
1ppr_M_101	1ppr	M	PIDPERIDININ	M - 123
1ppr_M_101	1ppr	M	PIDPERIDININ	K - 124
1ppr_M_101	1ppr	M	DGDDIGALACTOSYL DIACYL GLYCEROL (DGDG)	K - 124
1ppr_M_263	1ppr	M	PIDPERIDININ	K - 263
1ppr_M_263	1ppr	M	PIDPERIDININ	V - 266
1ppr_M_263	1ppr	M	PIDPERIDININ	M - 267
1ppr_M_263	1ppr	M	PIDPERIDININ	V - 269
1ppr_M_263	1ppr	M	DGDDIGALACTOSYL DIACYL GLYCEROL (DGDG)	V - 269
1ppr_M_263	1ppr	M	CLACHLOROPHYLL A	Y - 270
1ppr_M_263	1ppr	M	PIDPERIDININ	Y - 270
1ppr_M_263	1ppr	M	DGDDIGALACTOSYL DIACYL GLYCEROL (DGDG)	Y - 270
1ppr_M_263	1ppr	M	DGDDIGALACTOSYL DIACYL GLYCEROL (DGDG)	M - 273
1ppr_M_263	1ppr	M	DGDDIGALACTOSYL DIACYL GLYCEROL (DGDG)	A - 274
1ppr_M_263	1ppr	M	DGDDIGALACTOSYL DIACYL GLYCEROL (DGDG)	T - 277
1ppr_M_263	1ppr	M	PIDPERIDININ	D - 278
1ppr_M_263	1ppr	M	PIDPERIDININ	S - 280
1ppr_M_263	1ppr	M	PIDPERIDININ	I - 281
1ppr_M_263	1ppr	M	DGDDIGALACTOSYL DIACYL GLYCEROL (DGDG)	I - 281
1ppr_M_263	1ppr	M	PIDPERIDININ	P - 282
1ppr_M_263	1ppr	M	DGDDIGALACTOSYL DIACYL GLYCEROL (DGDG)	P - 282
1ppr_M_263	1ppr	M	PIDPERIDININ	L - 283
1ppr_M_263	1ppr	M	PIDPERIDININ	N - 284
1ppr_M_263	1ppr	M	PIDPERIDININ	M - 285
1ppr_M_263	1ppr	M	DGDDIGALACTOSYL DIACYL GLYCEROL (DGDG)	M - 285
1ppr_M_263	1ppr	M	PIDPERIDININ	F - 286
1ppr_M_263	1ppr	M	PIDPERIDININ	S - 287
2a0b_*_658	2a0b	*	ZNZINC ION	L - 662

Clusters included in this Subclass

CLUSTER: HH.2.95

CLUSTER: HH.3.110

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