ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.3.6

Subclass Accession number: 4584
Subclass: 2.3.6

PSSM

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 9

Average sequence ID (%) : 13.3 +/- 17.1
Average RMSD (Å) : 0.722 +/- 0.228

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 45-90

rho (°): 135-180

Consensus Sequence:	pphchX
(φψ)-conformation:	aabpaa

Pattern:	x	x	[EHQRS]	[HKQST]	x	[DNR]	[GILPVW]	[adekqs]	x	[afiv]
Conservation:	-0.851	-0.629	1.080	0.503	-1.111	2.083	-0.805	-0.250	-0.304	0.285

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bgf_*_35	1bgf	-	37	46	WIETQDWEVA	HHHHS-HHHH	aaaaxxaaaa
1d8c_A_538	1d8c	A	547	556	HYHQTNVQSV	HHHHS-HHHH	aaaabxaaaa
1feh_A_514	1feh	A	516	525	DLEKVDIKKV	HHHHS-HHHH	aaaabxaaaa
1itk_A_52	1itk	A	55	64	EFQKLDLEAV	HHHH--HHHH	aaaaxxaaaa
1khc_A_290	1khc	A	290	299	FSQHFNLATF	HHHH--HHHH	aaaaxbaaaa
1leh_A_138	1leh	A	140	149	FGSSGNPSPV	HHHH--HHHH	aaaabxaaaa
1msw_D_821	1msw	D	835	844	TYESCDVLAD	HHHH--HHHH	aaaabxaaaa
1n8i_A_545	1n8i	A	554	563	HYHQVDVAAV	HHHHS-HHHH	aaaabxaaaa
1uc2_A_412	1uc2	A	415	424	ATRQYRGDRI	HHHH--HHHH	aaaabbaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1d8c_A_538	1d8c	A	MSESELENOMETHIONINE	T - 539
1d8c_A_538	1d8c	A	MSESELENOMETHIONINE	A - 540
1d8c_A_538	1d8c	A	MSESELENOMETHIONINE	A - 541
1d8c_A_538	1d8c	A	MSESELENOMETHIONINE	L - 543
1d8c_A_538	1d8c	A	MSESELENOMETHIONINE	H - 544
1d8c_A_538	1d8c	A	MSESELENOMETHIONINE	H - 547
1khc_A_290	1khc	A	UNXUNKNOWN ATOM OR ION	F - 290
1khc_A_290	1khc	A	UNXUNKNOWN ATOM OR ION	S - 291
1khc_A_290	1khc	A	UNXUNKNOWN ATOM OR ION	Q - 292
1khc_A_290	1khc	A	UNXUNKNOWN ATOM OR ION	L - 296
1khc_A_290	1khc	A	UNXUNKNOWN ATOM OR ION	A - 297
1khc_A_290	1khc	A	UNXUNKNOWN ATOM OR ION	N - 300

Clusters included in this Subclass

CLUSTER: HH.1.56

CLUSTER: HH.2.96