Information on SUBCLASS 2.3.8 |
Subclass Accession number: 4586
Subclass: 2.3.8 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 7 Average sequence ID (%) : 13.3 +/- 14.6 Average RMSD (Å) : 0.629 +/- 0.281 Consensus geometry
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Consensus Sequence: | XXppXp |
(φψ)-conformation: | aabpaa |
Pattern: | x | [dehpr] | [DET] | [clmvy] | [glm] | [aklv] | x | [hkty] | [DPST] | x | [ADEN] | [DEKRTY] | [ILMV] | x |
Conservation: | -0.541 | -0.353 | 1.867 | -0.416 | -0.714 | -0.150 | -1.205 | 0.073 | 0.592 | -0.991 | 1.074 | -0.388 | 1.924 | -0.773 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1aua_*_131 | 1aua | - | 131 | 144 | LHEMNKVTSEERML | HHHHTTT--HHHHH | aaaaaaabbaaaaa |
1c3p_A_54 | 1c3p | A | 54 | 67 | KEELLLFHTEDYIN | HHHHTTTS-HHHHH | aaaaaaaxxaaaaa |
1i39_A_66 | 1i39 | A | 69 | 82 | LDERMAAKTINEIL | HHHHTTTS-HHHHH | aaaaaaabxaaaaa |
1i60_A_38 | 1i60 | A | 39 | 52 | LPEYLKDHSLDDLA | HHHHTTSS-HHHHH | aaaaaaabbaaaaa |
1jmx_A_94 | 1jmx | A | 97 | 110 | SETCGRCHSGARVA | HHHHSSSS-SHHHH | aaaaaaabxaaaaa |
1li5_A_277 | 1li5 | A | 277 | 290 | VRDVLKYYDAETVR | HHHHHTTS-HHHHH | aaaaaaabxaaaaa |
1pkl_A_262 | 1pkl | A | 262 | 275 | RGDLGVEIPAEKVV | HHHHTTTS-HHHHH | aaaaaaabwaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1aua_*_131 | 1aua | * | BOGB-OCTYLGLUCOSIDE | Y - 151 |
1i60_A_38 | 1i60 | A | MSESELENOMETHIONINE | K - 38 |
1i60_A_38 | 1i60 | A | MSESELENOMETHIONINE | L - 39 |
1i60_A_38 | 1i60 | A | MSESELENOMETHIONINE | P - 40 |
1jmx_A_94 | 1jmx | A | HECHEME C | L - 96 |
1jmx_A_94 | 1jmx | A | HECHEME C | E - 98 |
1jmx_A_94 | 1jmx | A | HECHEME C | T - 99 |
1jmx_A_94 | 1jmx | A | HECHEME C | C - 100 |
1jmx_A_94 | 1jmx | A | HECHEME C | G - 101 |
1jmx_A_94 | 1jmx | A | HECHEME C | R - 102 |
1jmx_A_94 | 1jmx | A | TRQ2-AMINO-3-(6,7-DIOXO-6,7-DIHYDRO-1H-INDOL-3-YL)-PROPIONIC ACID | C - 103 |
1jmx_A_94 | 1jmx | A | HECHEME C | C - 103 |
1jmx_A_94 | 1jmx | A | HECHEME C | H - 104 |
1jmx_A_94 | 1jmx | A | HECHEME C | R - 108 |
1jmx_A_94 | 1jmx | A | HECHEME C | V - 109 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1pkl_A_262 | 1pkl | A | DIVDIVALENT CATION BINDING SITE, BY ANALOGY WITH OTHER CRYSTAL STRUCTURES | D - 264 |
Clusters included in this Subclass |
CLUSTER: HH.4.262 |
CLUSTER: HH.5.128 |
CLUSTER: HH.6.83 |