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Information on SUBCLASS 2.3.8
Subclass Accession number: 4586
Subclass: 2.3.8 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 13.3 +/- 14.6
Average RMSD (Å) : 0.629 +/- 0.281

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: XXppXp
(φψ)-conformation: aabpaa
Pattern: x[dehpr][DET][clmvy][glm][aklv]x[hkty][DPST]x[ADEN][DEKRTY][ILMV]x
Conservation:-0.541-0.3531.867-0.416-0.714-0.150-1.2050.0730.592-0.9911.074-0.3881.924-0.773
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aua_*_1311aua   -131144LHEMNKVTSEERMLHHHHTTT--HHHHHaaaaaaabbaaaaa
1c3p_A_541c3p   A5467KEELLLFHTEDYINHHHHTTTS-HHHHHaaaaaaaxxaaaaa
1i39_A_661i39   A6982LDERMAAKTINEILHHHHTTTS-HHHHHaaaaaaabxaaaaa
1i60_A_381i60   A3952LPEYLKDHSLDDLAHHHHTTSS-HHHHHaaaaaaabbaaaaa
1jmx_A_941jmx   A97110SETCGRCHSGARVAHHHHSSSS-SHHHHaaaaaaabxaaaaa
1li5_A_2771li5   A277290VRDVLKYYDAETVRHHHHHTTS-HHHHHaaaaaaabxaaaaa
1pkl_A_2621pkl   A262275RGDLGVEIPAEKVVHHHHTTTS-HHHHHaaaaaaabwaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aua_*_1311aua   *     BOGB-OCTYLGLUCOSIDE Y - 151
1i60_A_381i60   A     MSESELENOMETHIONINE K - 38
1i60_A_381i60   A     MSESELENOMETHIONINE L - 39
1i60_A_381i60   A     MSESELENOMETHIONINE P - 40
1jmx_A_941jmx   A     HECHEME C L - 96
1jmx_A_941jmx   A     HECHEME C E - 98
1jmx_A_941jmx   A     HECHEME C T - 99
1jmx_A_941jmx   A     HECHEME C C - 100
1jmx_A_941jmx   A     HECHEME C G - 101
1jmx_A_941jmx   A     HECHEME C R - 102
1jmx_A_941jmx   A     TRQ2-AMINO-3-(6,7-DIOXO-6,7-DIHYDRO-1H-INDOL-3-YL)-PROPIONIC ACID C - 103
1jmx_A_941jmx   A     HECHEME C C - 103
1jmx_A_941jmx   A     HECHEME C H - 104
1jmx_A_941jmx   A     HECHEME C R - 108
1jmx_A_941jmx   A     HECHEME C V - 109
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1pkl_A_2621pkl   A DIVDIVALENT CATION BINDING SITE, BY ANALOGY WITH OTHER CRYSTAL STRUCTURESD - 264

Clusters included in this Subclass
CLUSTER: HH.4.262
CLUSTER: HH.5.128
CLUSTER: HH.6.83