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Information on SUBCLASS 2.3.15
Subclass Accession number: 4593
Subclass: 2.3.15 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 44.8 +/- 11.8
Average RMSD (Å) : 0.400 +/- 0.100

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: pXhcQX
(φψ)-conformation: aabpaa
Pattern: [APQ]x[W][KS][HY][EQ][WY]x[K][H][G][ST][C][ACS][EQ][KNS]x[FY][DN][Q]x[AGT][Y][F][GK][KL][A][LV][DR][LM][KR][DN]
Conservation:-1.054-0.7992.864-0.6110.449-0.0920.851-1.3180.4871.6750.883-0.3542.072-0.746-0.092-0.746-1.2300.374-0.0430.487-0.966-1.0101.2790.883-0.794-0.9660.091-0.468-0.729-0.225-0.072-0.081
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ioo_A_821ioo   A82113PSWKYQYIKHGSCCQKRYNQNTYFGLALRLKDHHHHHHHHHTGGG-TTT--HHHHHHHHHHHHHaaaaaaaaaaaaaaaaabbaaaaaaaaaaaaa
1iyb_A_871iyb   A88119AFWSHEWEKHGTCAENVFDQHGYFKKALDLKNHHHHHHHHHTGGGGTTT--HHHHHHHHHHHHHaaaaaaaaaaaaaaaaabxaaaaaaaaaaaaa
1uca_A_771uca   A79110QFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNHHHHHHHHHTGGGGTTT--HHHHHHHHHHHHHaaaaaaaaaaaaaaaaabxaaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ioo_A_821ioo   A     MANALPHA-D-MANNOSE R - 110
1ioo_A_821ioo   A     NAGN-ACETYL-D-GLUCOSAMINE K - 112
1ioo_A_821ioo   A     NAGN-ACETYL-D-GLUCOSAMINE D - 113
1ioo_A_821ioo   A     MANALPHA-D-MANNOSE D - 113
1ioo_A_821ioo   A     XYSXYLOPYRANOSE D - 113
1iyb_A_871iyb   A     5GPGUANOSINE-5'-MONOPHOSPHATE A - 88
1iyb_A_871iyb   A     5GPGUANOSINE-5'-MONOPHOSPHATE F - 89
1iyb_A_871iyb   A     5GPGUANOSINE-5'-MONOPHOSPHATE H - 92
1iyb_A_871iyb   A     5GPGUANOSINE-5'-MONOPHOSPHATE E - 93
1iyb_A_871iyb   A     5GPGUANOSINE-5'-MONOPHOSPHATE K - 96
1iyb_A_871iyb   A     5GPGUANOSINE-5'-MONOPHOSPHATE H - 97
1uca_A_771uca   A     U2PPHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER F - 80
1uca_A_771uca   A     U2PPHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER H - 83
1uca_A_771uca   A     U2PPHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER E - 84
1uca_A_771uca   A     U2PPHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER K - 87
1uca_A_771uca   A     U2PPHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER H - 88

Clusters included in this Subclass
CLUSTER: HH.9.84