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Information on SUBCLASS 2.4.1
Subclass Accession number: 4603
Subclass: 2.4.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 13

Average sequence ID (%) : 20.1 +/- 22.0
Average RMSD (Å) : 0.438 +/- 0.260

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXXXGX
(φψ)-conformation: aapbea
Pattern: [ail]xxx[astv]x[ag]xxx[adenqt][aenqr][ailmv]x
Conservation:0.385-0.885-0.712-0.5830.416-0.5573.030-0.640-0.027-0.212-0.051-0.1300.720-0.752
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dt0_A_521dt0   A5568IVKTSSGGIFNNAAHHHH--HHHHHHHHaaaaxbeaaaaaaa
1f0c_A_541f0c   A6477LYYGANGSTAEQLSHHHH--THHHHHHHaaaaxbeaaaaaaa
1h2s_A_951h2s   A114127AGAMVPGIERYALFHHHH--STHHHHHHaaaabxeaaaaaaa
1hle_A_541hle   A6477IFLGTRGNTAAQVSHHHT--HHHHHHHHaaaaxbeaaaaaaa
1isa_A_521isa   A5568IIRSSEGGVFNNAAHHHH--HHHHHHHHaaaabbeaaaaaaa
1lj5_A_361lj5   A4659LQLTTGGETQQQIQHHHH--HHHHHHHHaaaaxbeaaaaaaa
1m93_A_201m93   A3043LYYGANGSTAEQLSHHHH--HHHHHHHHaaaaxbeaaaaaaa
1mtp_A_361mtp   A4659LAAGARATTRTELTHHHT--HHHHHHHHaaaabbeaaaaaaa
1n7o_A_4711n7o   A485498IADMSEGETKQRLQHHHHS-HHHHHHHHaaaaxbeaaaaaaa
1qnn_A_531qnn   A5669IVQKSEGGIFNNAGHHHH--HHHHHHHHaaaaxbeaaaaaaa
1sek_*_511sek   -5770LALASVGESHDELLHHHH--HHHHHHHHaaaaxbeaaaaaaa
1v54_F_91v54   F922DEEQATGLEREVMLHHHH--HHHHHHHHaaaapbeaaaaaaa
1v9m_A_721v9m   A7285LPRLVTGEAREAVRHHHH--HHHHHHHHaaaabbeaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dt0_A_521dt0   A     FEFE (III) ION Q - 69
1dt0_A_521dt0   A     FEFE (III) ION H - 73
1dt0_A_521dt0   A     FEFE (III) ION Y - 76
1h2s_A_951h2s   A     RETRETINAL V - 108
1h2s_A_951h2s   A     RETRETINAL M - 109
1h2s_A_951h2s   A     RETRETINAL A - 111
1h2s_A_951h2s   A     RETRETINAL G - 112
1h2s_A_951h2s   A     RETRETINAL F - 113
1h2s_A_951h2s   A     RETRETINAL L - 126
1h2s_A_951h2s   A     RETRETINAL F - 127
1h2s_A_951h2s   A     RETRETINAL G - 130
1h2s_A_951h2s   A     RETRETINAL A - 131
1h2s_A_951h2s   A     RETRETINAL F - 134
1isa_A_521isa   A     FE2FE (II) ION Q - 69
1isa_A_521isa   A     FE2FE (II) ION H - 73
1isa_A_521isa   A     FE2FE (II) ION Y - 76
1qnn_A_531qnn   A     FEFE (III) ION Q - 70
1qnn_A_531qnn   A     FEFE (III) ION H - 74
1qnn_A_531qnn   A     FEFE (III) ION Y - 77
1v54_F_91v54   F     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE D - 9
1v54_F_91v54   F     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE Q - 12
1v54_F_91v54   F     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE A - 13
1v54_F_91v54   F     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE E - 17
1v9m_A_721v9m   A     GOLGLYCEROL R - 85
1v9m_A_721v9m   A     GOLGLYCEROL L - 89
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1qnn_A_531qnn   A FE1METAL BINDING SITE OF CHAIN AH - 74

Clusters included in this Subclass
CLUSTER: HH.1.75
CLUSTER: HH.2.74
CLUSTER: HH.3.60