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Information on SUBCLASS 2.5.1
Subclass Accession number: 4614
Subclass: 2.5.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 17

Average sequence ID (%) : 21.1 +/- 27.5
Average RMSD (Å) : 0.565 +/- 0.234

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: hXcXXp
(φψ)-conformation: aalbaa
Pattern: xx[afklv]x[gknrs][adegkn]x[aegqs]xxx
Conservation:-0.472-0.8510.458-0.1071.8680.149-0.5041.694-1.307-0.293-0.634
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1all_B_781all   B98108AMLAGDPSILDHHHHT-SHHHHaaaavbaaaaa
1cpc_B_781cpc   B98108AIFAGDASVLDHHHHTSTHHHHaaaavbaaaaa
1e6y_B_22971e6y   B23162326CGAGRAAQNVSHHHHT-TTHHHaaaalbaaaaa
1eyx_B_761eyx   B96106ALLAGDSSVLEHHHHT-SHHHHaaaavbaaaaa
1gh0_B_761gh0   B96106AVFAGDASVLEHHHHT-SHHHHaaaavbaaaaa
1h7e_A_1931h7e   A195205EQAESLEQLRLHHHHT-TTHHHaaaavbaaaaa
1hbn_B_2991hbn   B318328QGAARAAQGVSHHHHT-GGGHHaaaalbaaaaa
1jbo_B_781jbo   B98108AILAGDSSVLDHHHHTSSHHHHaaaavbaaaaa
1jny_A_351jny   A4555AKKLGKESEKFHHHHT-THHHHaaaavbaaaaa
1kn1_B_781kn1   B98108AMLAGDPSILDHHHHTSTHHHHaaaavbaaaaa
1phn_A_781phn   A98108CLVVGGTGPMDHHHHTSSHHHHaaaavbaaaaa
1q5n_A_651q5n   A7282TGLAGNIAIPFHHHHSSSHHHHaaaavbaaaaa
1qgw_C_761qgw   C96106ALLSGDASVLEHHHHT-SHHHHaaaavbaaaaa
1qht_A_6171qht   A630640ILKHGDVEEAVHHHH--HHHHHaaaalbaaaaa
1uuq_A_1561uuq   A156166PNVTNEWEAFMHHHH--HHHHHaaaalbaaaaa
1vic_A_2061vic   A208218ENLEKLEQLRVHHHHT-TTHHHaaaavbaaaaa
4mdh_A_2084mdh   A209219YEAVKDDSWLKHHHH--HHHHHaaaavbaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1all_B_781all   B     CYCPHYCOCYANOBILIN R - 79
1all_B_781all   B     CYCPHYCOCYANOBILIN R - 80
1all_B_781all   B     CYCPHYCOCYANOBILIN Y - 81
1all_B_781all   B     CYCPHYCOCYANOBILIN A - 83
1all_B_781all   B     CYCPHYCOCYANOBILIN C - 84
1all_B_781all   B     CYCPHYCOCYANOBILIN I - 85
1all_B_781all   B     CYCPHYCOCYANOBILIN R - 86
1all_B_781all   B     CYCPHYCOCYANOBILIN D - 87
1all_B_781all   B     CYCPHYCOCYANOBILIN L - 88
1all_B_781all   B     CYCPHYCOCYANOBILIN Y - 90
1all_B_781all   B     CYCPHYCOCYANOBILIN Y - 91
1all_B_781all   B     CYCPHYCOCYANOBILIN Y - 94
1all_B_781all   B     CYCPHYCOCYANOBILIN R - 110
1cpc_B_781cpc   B     NMAN-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-2-METHYLALANINE R - 80
1cpc_B_781cpc   B     CYCPHYCOCYANOBILIN M - 81
1cpc_B_781cpc   B     CYCPHYCOCYANOBILIN L - 85
1cpc_B_781cpc   B     CYCPHYCOCYANOBILIN M - 88
1cpc_B_781cpc   B     CYCPHYCOCYANOBILIN I - 90
1cpc_B_781cpc   B     CYCPHYCOCYANOBILIN I - 91
1cpc_B_781cpc   B     CYCPHYCOCYANOBILIN R - 93
1eyx_B_761eyx   B     CYCPHYCOCYANOBILIN R - 77
1eyx_B_761eyx   B     MENN-METHYL ASPARAGINE R - 78
1eyx_B_761eyx   B     CYCPHYCOCYANOBILIN R - 78
1eyx_B_761eyx   B     MENN-METHYL ASPARAGINE M - 79
1eyx_B_761eyx   B     CYCPHYCOCYANOBILIN M - 79
1eyx_B_761eyx   B     CYCPHYCOCYANOBILIN A - 81
1eyx_B_761eyx   B     MENN-METHYL ASPARAGINE C - 82
1eyx_B_761eyx   B     CYCPHYCOCYANOBILIN C - 82
1eyx_B_761eyx   B     CYCPHYCOCYANOBILIN L - 83
1eyx_B_761eyx   B     CYCPHYCOCYANOBILIN R - 84
1eyx_B_761eyx   B     CYCPHYCOCYANOBILIN D - 85
1eyx_B_761eyx   B     CYCPHYCOCYANOBILIN G - 86
1eyx_B_761eyx   B     CYCPHYCOCYANOBILIN I - 88
1eyx_B_761eyx   B     CYCPHYCOCYANOBILIN I - 89
1eyx_B_761eyx   B     CYCPHYCOCYANOBILIN R - 91
1eyx_B_761eyx   B     CYCPHYCOCYANOBILIN Y - 92
1eyx_B_761eyx   B     CYCPHYCOCYANOBILIN R - 108
1gh0_B_761gh0   B     CYCPHYCOCYANOBILIN S - 76
1gh0_B_761gh0   B     CYCPHYCOCYANOBILIN M - 86
1jbo_B_781jbo   B     MENN-METHYL ASPARAGINE R - 80
1jbo_B_781jbo   B     MENN-METHYL ASPARAGINE M - 81
1phn_A_781phn   A     CYCPHYCOCYANOBILIN V - 79
1phn_A_781phn   A     CYCPHYCOCYANOBILIN G - 80
1phn_A_781phn   A     CYCPHYCOCYANOBILIN K - 81
1phn_A_781phn   A     CYCPHYCOCYANOBILIN K - 83
1phn_A_781phn   A     CYCPHYCOCYANOBILIN A - 85
1phn_A_781phn   A     CYCPHYCOCYANOBILIN M - 94
1phn_A_781phn   A     CYCPHYCOCYANOBILIN Y - 110
1qgw_C_761qgw   C     PEBPHYCOERYTHROBILIN R - 77
1qgw_C_761qgw   C     PEBPHYCOERYTHROBILIN R - 78
1qgw_C_761qgw   C     PEBPHYCOERYTHROBILIN M - 79
1qgw_C_761qgw   C     PEBPHYCOERYTHROBILIN A - 81
1qgw_C_761qgw   C     PEBPHYCOERYTHROBILIN C - 82
1qgw_C_761qgw   C     PEBPHYCOERYTHROBILIN L - 83
1qgw_C_761qgw   C     PEBPHYCOERYTHROBILIN R - 84
1qgw_C_761qgw   C     PEBPHYCOERYTHROBILIN D - 85
1qgw_C_761qgw   C     PEBPHYCOERYTHROBILIN G - 86
1qgw_C_761qgw   C     PEBPHYCOERYTHROBILIN I - 88
1qgw_C_761qgw   C     PEBPHYCOERYTHROBILIN I - 89
1qgw_C_761qgw   C     PEBPHYCOERYTHROBILIN Y - 92
1qgw_C_761qgw   C     PEBPHYCOERYTHROBILIN R - 108

Clusters included in this Subclass
CLUSTER: HH.3.52
CLUSTER: HH.5.158