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Information on SUBCLASS 2.5.3
Subclass Accession number: 4616
Subclass: 2.5.3 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 14.0 +/- 14.0
Average RMSD (Å) : 0.529 +/- 0.221

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XXXcXX
(φψ)-conformation: aalbaa
Pattern: [aglv][afklv]xx[afkv][aglw]xxx[EGS][DKNY]x[AEKNR][fgklt][ALY]
Conservation:-0.359-0.539-0.779-0.656-0.419-0.608-0.004-0.656-0.3032.5031.399-0.6090.594-0.8861.321
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bo4_A_371bo4   A4357ALDLFGREFGDVATYHHHHHHHHTT-HHHHaaaaaaaaavbaaaa
1dxy_*_1201dxy   -121135GKVQAQLQAGDYEKAHHHHHHHHTT-HHHHaaaaaaaaavbaaaa
1iq0_A_3611iq0   A363377LVRAALALAGYPALAHHHHHHHHTT-HHHHaaaaaaaaavbaaaa
1kbl_A_1151kbl   A115129AVEGFAKKTGNPRFAHHHHHHHHHT-HHHHaaaaaaaaavbaaaa
1ni9_A_61ni9   A1832LAGYKWLGRGDKNTAHHHHHHHHTT-HHHHaaaaaaaaavxaaaa
1qsa_A_691qsa   A7791RFVNELARREDWRGLHHHHHHHHTT-HHHHaaaaaaaaavxaaaa
2hgs_A_1602hgs   A162176VHRHVLSVLSKTKEAHHHHHHHHTT-HHHHaaaaaaaaavbaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bo4_A_371bo4   A     COACOENZYME A E - 50
1bo4_A_371bo4   A     SPDSPERMIDINE F - 51
1bo4_A_371bo4   A     COACOENZYME A F - 51
1bo4_A_371bo4   A     SPDSPERMIDINE Y - 57

Clusters included in this Subclass
CLUSTER: HH.3.109
CLUSTER: HH.4.194