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Information on SUBCLASS 2.5.5
Subclass Accession number: 4618
Subclass: 2.5.5 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 16.9 +/- 17.6
Average RMSD (Å) : 0.580 +/- 0.130

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: pppDhp
(φψ)-conformation: aalbaa
Pattern: xx[AEGN][ACIL]x[AKR]x[ehnr][DE][FPVW]xx[ALV][KLV][ART][FIY]
Conservation:-0.119-0.486-0.3360.092-1.1930.847-0.547-0.2032.987-0.814-0.817-1.0220.3410.1370.3770.756
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1d5a_A_6171d5a   A627642LEAILKHGDVEEAVRIHHHHHTT--HHHHHHHaaaaaaavbaaaaaaa
1f7u_A_5341f7u   A538553LRNAIKTHEPTTVVTYHHHHHHH--HHHHHHHaaaaaaavbaaaaaaa
1iex_A_1121iex   A112127NVGLGATRDPYLVKRIHHHHHHHT-HHHHHHHaaaaaaalbaaaaaaa
1qsa_A_691qsa   A7994VNELARREDWRGLLAFHHHHHHTT-HHHHHHHaaaaaaavxaaaaaaa
1v54_E_451v54   E5267LRACRRLNDFASAVRIHHHHHHTT-HHHHHHHaaaaaaalbaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1f7u_A_5341f7u   A     DHU5,6-DIHYDROURIDINE-5'-PHOSPHATE N - 540
1f7u_A_5341f7u   A     DHU5,6-DIHYDROURIDINE-5'-PHOSPHATE K - 543

Clusters included in this Subclass
CLUSTER: HH.3.158