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Information on SUBCLASS 2.8.4
Subclass Accession number: 4634
Subclass: 2.8.4 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 15.2 +/- 14.6
Average RMSD (Å) : 0.700 +/- 0.100

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXXXGp
(φψ)-conformation: aabbea
Pattern: [GIL]x[EH][DR][ILV][AT]x[HMV]x[EGT][G][DES]xxxx[LM]xx[FL][FV][KST]
Conservation:-1.028-1.4351.0760.2580.7600.486-0.866-0.459-0.216-0.7033.1980.353-0.459-0.459-0.541-0.1591.157-0.785-0.9470.5790.244-0.053
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1n00_A_1381n00   A138159LEEDVAHHTTGDFHKLLLPLVSHHHHHHHH--HHHHHHHHHHHHaaaaaaaabbeaaaaaaaaaaa
1n7o_A_4711n7o   A481502GIHRIADMSEGETKQRLQSLVKHHHHHHHHS-HHHHHHHHHHHHaaaaaaaaxbeaaaaaaaaaaa
1un8_A_4131un8   A420441IGERLTVVMGGSSGVLMSIFFTHHHHHHHHS-HHHHHHHHHHHHaaaaaaaabxeaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1un8_A_4131un8   A     MYY(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYL PALMITATE L - 413
1un8_A_4131un8   A     MYY(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYL PALMITATE L - 416
1un8_A_4131un8   A     MYY(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYL PALMITATE F - 417
1un8_A_4131un8   A     MYY(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYL PALMITATE I - 420
1un8_A_4131un8   A     MYY(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYL PALMITATE L - 424
1un8_A_4131un8   A     MYY(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYL PALMITATE M - 428
1un8_A_4131un8   A     MYY(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYL PALMITATE M - 436
1un8_A_4131un8   A     MYY(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYL PALMITATE F - 439
1un8_A_4131un8   A     MYY(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYL PALMITATE F - 440
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1un8_A_4131un8   A AC1MYY BINDING SITE FOR CHAIN AL - 413
1un8_A_4131un8   A AC1MYY BINDING SITE FOR CHAIN AI - 420
1un8_A_4131un8   A AC1MYY BINDING SITE FOR CHAIN AM - 436
1un8_A_4131un8   A AC1MYY BINDING SITE FOR CHAIN AF - 440

Clusters included in this Subclass
CLUSTER: HH.2.248