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Information on SUBCLASS 3.1.4
Subclass Accession number: 4650
Subclass: 3.1.4 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 29

Average sequence ID (%) : 11.8 +/- 15.9
Average RMSD (Å) : 0.869 +/- 0.229

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 90-135 rho (°): 225-270
Consensus Sequence: XhXhXXp
(φψ)-conformation: aalppaa
Pattern: [adekqrst][adegnrs]xx[adeknqrst][adeknqrst]x[adegknqs][afilmvwy][dgnpst]x[adegknqrst]xxx
Conservation:-0.0800.559-0.297-0.8110.252-0.620-0.3671.4781.0391.715-1.9460.1160.0450.397-1.480
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1afw_A_1861afw   A191205ENVAANFKISRKDQDHHHHHHTT--HHHHHaaaaaaalxxaaaaa
1aog_A_4341aog   A441455IGICLKLNAKISDFYHHHHHHTT-BHHHHHaaaaaaavxbaaaaa
1b0n_B_131b0n   B1933MVEAKEANISPEEIRHHHHHHTT--HHHHHaaaaaaavxxaaaaa
1b8d_A_1131b8d   A114128REVYRALNLPGSAYIHHHHHHTT--HHHHHaaaaaaalbxaaaaa
1b8d_B_1131b8d   B114128KETYIALGVPTASSSHHHHHHHT--HHHHHaaaaaaavxxaaaaa
1cg5_B_821cg5   B8599SGKHQEIGVDTQNFKHHHHHHHT--THHHHaaaaaaagxxaaaaa
1eyx_A_1131eyx   A114128REVYRTLNLPTSAYIHHHHHHTT--HHHHHaaaaaaavbpaaaaa
1ez4_A_2111ez4   A212226RDVAKEQGVSDDDLAHHHHHHTT--HHHHHaaaaaaavbxaaaaa
1gh0_A_1151gh0   A116130DEINRTFELSPSWYIHHHHHHTT--HHHHHaaaaaaalbxaaaaa
1hg4_A_3941hg4   A394408SVKMKRLNLDRRELSHHHHHHHT--HHHHHaaaaaaavpbaaaaa
1hlb_*_981hlb   -101115ARTHDLNKVGADHYNHHHHHHTT--HHHHHaaaaaaalxbaaaaa
1j37_A_2861j37   A286300SAEMEKQAYTPLKMFHHHHHHTT--HHHHHaaaaaaavxbaaaaa
1jbo_A_1151jbo   A116130SEINSTFDLSPSWYIHHHHHHHT--HHHHHaaaaaaalbxaaaaa
1k6k_A_381k6k   A4155REALEACSVDLVALRHHHHHHTT--HHHHHaaaaaaalxxaaaaa
1kn1_B_1151kn1   B116130KETYNSLGVPIGATIHHHHHHHT--HHHHHaaaaaaavxxaaaaa
1ld8_A_1311ld8   A138152RVLLKSLQKDLHEEMHHHHHHTT--HHHHHaaaaaaalxxaaaaa
1lht_*_831lht   -91105ESHATKHKIPVKYLEHHHHHTT---HHHHHaaaaaaavbpaaaaa
1m3k_A_1571m3k   A162176ENVAKQWQLSRDEQDHHHHHHTT--HHHHHaaaaaaalbxaaaaa
1m6j_A_1031m6j   A103117SERRQIFHESNEQVAHHHHHHS---HHHHHaaaaaaalxxaaaaa
1mvc_A_3541mvc   A354368VSKMRDMQMDKTELGHHHHHHTT--HHHHHaaaaaaalpxaaaaa
1n55_A_961n55   A96110SERRTYYGETDEIVAHHHHHHS---HHHHHaaaaaaavxxaaaaa
1ndy_A_3041ndy   A309323QMTKKDMGFTEEEFKHHHHHHH---HHHHHaaaaaaavxbaaaaa
1o5x_A_961o5x   A96110FERRKYFHETDEDVRHHHHHHS---HHHHHaaaaaaalxbaaaaa
1o8a_A_3011o8a   A302316TEAMLKQGWTPRRMFHHHHHHTT--HHHHHaaaaaaalxbaaaaa
1pfo_*_2001pfo   -201215KVLENSLGVDFNAVAHHHHHHT---HHHHHaaaaaaavxxaaaaa
1qgw_C_1131qgw   C114128KETYSSLGVPANSNAHHHHHHHT--HHHHHaaaaaaavxxaaaaa
1r5q_A_331r5q   A4054INAVFCANIPVPEIIHHHHHHTT--HHHHHaaaaaaalxxaaaaa
1rtx_A_711rtx   A7185KELVENHGLNGEHFDHHHHHHS---HHHHHaaaaaaavxbaaaaa
2btm_A_952btm   A95109SERRQMFAETDETVNHHHHHHS---HHHHHaaaaaaavxbaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1afw_A_1861afw   A     MPD2-METHYL-2,4-PENTANEDIOL M - 186
1b0n_B_131b0n   B     ZNZINC ION Q - 13
1b0n_B_131b0n   B     ZNZINC ION E - 14
1b0n_B_131b0n   B     ZNZINC ION W - 15
1b0n_B_131b0n   B     ZNZINC ION E - 17
1b0n_B_131b0n   B     ZNZINC ION V - 20
1b0n_B_131b0n   B     ZNOZINC ION, 2 WATERS COORDINATED V - 20
1b0n_B_131b0n   B     ZNZINC ION E - 21
1b0n_B_131b0n   B     ZNOZINC ION, 2 WATERS COORDINATED E - 21
1b0n_B_131b0n   B     ZNZINC ION E - 24
1b0n_B_131b0n   B     ZNOZINC ION, 2 WATERS COORDINATED E - 24
1b8d_B_1131b8d   B     PEBPHYCOERYTHROBILIN L - 113
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN V - 116
1b8d_B_1131b8d   B     PEBPHYCOERYTHROBILIN T - 116
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN Y - 117
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN L - 120
1b8d_B_1131b8d   B     MENN-METHYL ASPARAGINE L - 120
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN N - 121
1b8d_B_1131b8d   B     MENN-METHYL ASPARAGINE G - 121
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN L - 122
1b8d_B_1131b8d   B     MENN-METHYL ASPARAGINE V - 122
1b8d_B_1131b8d   B     PEBPHYCOERYTHROBILIN V - 122
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN P - 123
1b8d_B_1131b8d   B     MENN-METHYL ASPARAGINE P - 123
1b8d_B_1131b8d   B     PEBPHYCOERYTHROBILIN T - 124
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN A - 126
1b8d_B_1131b8d   B     PEBPHYCOERYTHROBILIN S - 126
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN Y - 127
1b8d_B_1131b8d   B     PEBPHYCOERYTHROBILIN S - 127
1b8d_B_1131b8d   B     PEBPHYCOERYTHROBILIN S - 128
1b8d_B_1131b8d   B     PUBPHYCOUROBILIN R - 129
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN A - 130
1b8d_B_1131b8d   B     PUBPHYCOUROBILIN S - 132
1b8d_B_1131b8d   B     PUBPHYCOUROBILIN I - 133
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN T - 134
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN R - 135
1b8d_B_1131b8d   B     PUBPHYCOUROBILIN A - 136
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN R - 137
1b8d_B_1131b8d   B     PUBPHYCOUROBILIN T - 137
1b8d_B_1131b8d   B     PUBPHYCOUROBILIN A - 138
1b8d_B_1131b8d   B     PUBPHYCOUROBILIN A - 140
1b8d_B_1131b8d   B     PEBPHYCOERYTHROBILIN F - 141
1b8d_B_1131b8d   B     PUBPHYCOUROBILIN F - 141
1b8d_B_1131b8d   B     PEBPHYCOERYTHROBILIN I - 142
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 84
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE K - 87
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE H - 88
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE I - 91
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE V - 93
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE D - 94
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE N - 97
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE F - 98
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 101
1eyx_A_1131eyx   A     CYCPHYCOCYANOBILIN V - 116
1eyx_A_1131eyx   A     CYCPHYCOCYANOBILIN Y - 117
1eyx_A_1131eyx   A     CYCPHYCOCYANOBILIN L - 120
1eyx_A_1131eyx   A     CYCPHYCOCYANOBILIN L - 122
1eyx_A_1131eyx   A     CYCPHYCOCYANOBILIN P - 123
1eyx_A_1131eyx   A     CYCPHYCOCYANOBILIN A - 126
1eyx_A_1131eyx   A     CYCPHYCOCYANOBILIN Y - 127
1eyx_A_1131eyx   A     CYCPHYCOCYANOBILIN A - 130
1eyx_A_1131eyx   A     CYCPHYCOCYANOBILIN T - 134
1eyx_A_1131eyx   A     CYCPHYCOCYANOBILIN D - 136
1eyx_A_1131eyx   A     CYCPHYCOCYANOBILIN R - 137
1gh0_A_1151gh0   A     CYCPHYCOCYANOBILIN I - 115
1gh0_A_1151gh0   A     CYCPHYCOCYANOBILIN I - 118
1gh0_A_1151gh0   A     CYCPHYCOCYANOBILIN N - 119
1gh0_A_1151gh0   A     CYCPHYCOCYANOBILIN F - 122
1gh0_A_1151gh0   A     CYCPHYCOCYANOBILIN L - 124
1gh0_A_1151gh0   A     CYCPHYCOCYANOBILIN W - 128
1gh0_A_1151gh0   A     CYCPHYCOCYANOBILIN Y - 129
1gh0_A_1151gh0   A     CYCPHYCOCYANOBILIN A - 132
1hlb_*_981hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE T - 99
1hlb_*_981hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 100
1hlb_*_981hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE T - 103
1hlb_*_981hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE H - 104
1hlb_*_981hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 106
1hlb_*_981hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE N - 107
1hlb_*_981hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE V - 109
1hlb_*_981hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE H - 113
1hlb_*_981hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 114
1hlb_*_981hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 117
1jbo_A_1151jbo   A     CYCPHYCOCYANOBILIN L - 115
1kn1_B_1151kn1   B     CYCPHYCOCYANOBILIN T - 118
1kn1_B_1151kn1   B     CYCPHYCOCYANOBILIN Y - 119
1kn1_B_1151kn1   B     CYCPHYCOCYANOBILIN V - 124
1kn1_B_1151kn1   B     CYCPHYCOCYANOBILIN P - 125
1kn1_B_1151kn1   B     CYCPHYCOCYANOBILIN A - 128
1kn1_B_1151kn1   B     CYCPHYCOCYANOBILIN T - 129
1lht_*_831lht   *     HEMPROTOPORPHYRIN IX CONTAINING FE P - 88
1lht_*_831lht   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 89
1lht_*_831lht   *     HEMPROTOPORPHYRIN IX CONTAINING FE S - 92
1lht_*_831lht   *     HEMPROTOPORPHYRIN IX CONTAINING FE H - 93
1lht_*_831lht   *     CYNCYANIDE ION H - 93
1lht_*_831lht   *     HEMPROTOPORPHYRIN IX CONTAINING FE H - 97
1lht_*_831lht   *     HEMPROTOPORPHYRIN IX CONTAINING FE I - 99
1lht_*_831lht   *     HEMPROTOPORPHYRIN IX CONTAINING FE P - 100
1lht_*_831lht   *     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 103
1lht_*_831lht   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 104
1lht_*_831lht   *     HEMPROTOPORPHYRIN IX CONTAINING FE I - 107
1lht_*_831lht   *     CYNCYANIDE ION I - 107
1lht_*_831lht   *     HEMPROTOPORPHYRIN IX CONTAINING FE C - 108
1lht_*_831lht   *     HEMPROTOPORPHYRIN IX CONTAINING FE I - 111
1m3k_A_1571m3k   A     GOLGLYCEROL M - 157
1m3k_A_1571m3k   A     GOLGLYCEROL G - 158
1n55_A_961n55   A     PGA2-PHOSPHOGLYCOLIC ACID E - 97
1n55_A_961n55   A     GOLGLYCEROL R - 98
1n55_A_961n55   A     GOLGLYCEROL C - 117
1o5x_A_961o5x   A     3PY3-HYDROXYPYRUVIC ACID F - 96
1o5x_A_961o5x   A     3PY3-HYDROXYPYRUVIC ACID E - 97
1o8a_A_3011o8a   A     NDG2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE R - 313
1qgw_C_1131qgw   C     LYZ5-HYDROXYLYSINE T - 116
1qgw_C_1131qgw   C     PEBPHYCOERYTHROBILIN N - 127
1qgw_C_1131qgw   C     PEBPHYCOERYTHROBILIN R - 129
1qgw_C_1131qgw   C     PEBPHYCOERYTHROBILIN S - 132
1qgw_C_1131qgw   C     PEBPHYCOERYTHROBILIN I - 133
1qgw_C_1131qgw   C     PEBPHYCOERYTHROBILIN A - 136
1qgw_C_1131qgw   C     PEBPHYCOERYTHROBILIN C - 137
1qgw_C_1131qgw   C     PEBPHYCOERYTHROBILIN A - 138
1qgw_C_1131qgw   C     PEBPHYCOERYTHROBILIN A - 140
1qgw_C_1131qgw   C     PEBPHYCOERYTHROBILIN V - 142
1qgw_C_1131qgw   C     PEBPHYCOERYTHROBILIN N - 143
1rtx_A_711rtx   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 73
1rtx_A_711rtx   A     CDCADMIUM ION N - 76
1rtx_A_711rtx   A     CDCADMIUM ION H - 77
1rtx_A_711rtx   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 79
1rtx_A_711rtx   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 83
1rtx_A_711rtx   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 84
1rtx_A_711rtx   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 85
1rtx_A_711rtx   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 87
1rtx_A_711rtx   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 88
2btm_A_952btm   A     PGA2-PHOSPHOGLYCOLIC ACID E - 96

Clusters included in this Subclass
CLUSTER: HH.3.126
CLUSTER: HH.4.13
CLUSTER: HH.5.268