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Information on SUBCLASS 3.1.5
Subclass Accession number: 4651
Subclass: 3.1.5 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 28

Average sequence ID (%) : 12.3 +/- 14.5
Average RMSD (Å) : 0.757 +/- 0.263

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: XXchpXX
(φψ)-conformation: aalppaa
Pattern: xxxx[aeknqrst]x[egknq][afgilmvy][dknpst]x[adegknqrt][adegknqrt][acfilvwy]
Conservation:-0.637-0.758-0.073-0.5491.279-0.7411.9370.5961.163-1.701-0.1970.043-0.363
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a6m_*_831a6m   -92104SHATKHKIPIKYLHHHHTS---HHHHaaaaaalbxaaaa
1a9x_A_4861a9x   A490502RQLKRKGFADARLHHHHHTT--HHHHaaaaaavxxaaaa
1aor_A_5201aor   A536548LFNLKAGLDPARDHHHHHHT--HHHHaaaaaagpbaaaa
1d8u_A_981d8u   A106118ATHLKYGVGDAHFHHHHHTT--HHHHaaaaaavxbaaaa
1dc1_A_691dc1   A7183ALLYASGISDKAKHHHHHTT--HHHHaaaaaavbxaaaa
1dd9_A_1371dd9   A141153QYLEKRGLSHEVIHHHHHTT--HHHHaaaaaavxxaaaa
1e2h_A_2291e2h   A246258VRYLQCGGSWREDHHHHHTT--HHHHaaaaaavxbaaaa
1e3o_C_61e3o   C1830QRRIKLGFTQGDVHHHHHTT--HHHHaaaaaavxxaaaa
1geq_A_491geq   A5668YRALKNGFKLREAHHHHHTT--HHHHaaaaaavxbaaaa
1gvh_A_751gvh   A8395QKHTSFQIKPEQYHHHHHTT--HHHHaaaaaalxbaaaa
1iwp_A_4541iwp   A462474EEMMKRNITGLDIHHHHHTT--HHHHaaaaaalxbaaaa
1k6k_A_1191k6k   A122134YLLRKHEVSRLDVHHHHHTT--HHHHaaaaaalxxaaaa
1khy_A_1201khy   A124136DILKAAGATTANIHHHHHTT--HHHHaaaaaagxbaaaa
1kw4_A_361kw4   A3749DDFIQQEIDGQALHHHHHTT--HHHHaaaaaalxbaaaa
1l5w_A_6801l5w   A684696KAILAKGYDPVKWHHHHHH---HHHHaaaaaavxbaaaa
1l6w_A_291l6w   A3042SIIAAGKKPLDVVHHHHHH-S-HHHHaaaaaagxxaaaa
1m1n_B_1531m1n   B153165CMAEVIGDDLNAFHHHHHHT--HHHHaaaaaavpxaaaa
1mw7_A_1411mw7   A142154NEVENLKLSLEDLHHHHHTT--HHHHaaaaaalbxaaaa
1pjr_*_1411pjr   -149161SAAKNELLPPEQFHHHHHTT--HHHHaaaaaalbxaaaa
1qop_A_621qop   A6981LRAFAAGVTPAQCHHHHHTT--HHHHaaaaaavxbaaaa
1qtm_A_6261qtm   A629641IRVFQEGRDIHTEHHHHHTT--HHHHaaaaaalxbaaaa
1rku_A_391rku   A4860RILDEHGLKLGDIHHHHHTT--HHHHaaaaaavxxaaaa
1sct_A_871sct   A99111VNHINRKISGDAFHHHHHTT--HHHHaaaaaavbxaaaa
1sct_B_891sct   B101113VNHINRQISADEFHHHHHTT--HHHHaaaaaalbxaaaa
1ujp_A_601ujp   A6779ELALRKGMSVQGAHHHHHTT--HHHHaaaaaavxbaaaa
1uoc_A_1151uoc   A119131ELLRKSGINFEKHHHHHHTT--HHHHaaaaaavbxaaaa
2cro_*_22cro   -820KRRIALKMTQTELHHHHHTT--HHHHaaaaaalbxaaaa
3sdh_A_873sdh   A99111VNHITRKISAAEFHHHHTTT--HHHHaaaaaavxxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a6m_*_831a6m   *     HEMPROTOPORPHYRIN IX CONTAINING FE P - 88
1a6m_*_831a6m   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 89
1a6m_*_831a6m   *     HEMPROTOPORPHYRIN IX CONTAINING FE S - 92
1a6m_*_831a6m   *     HEMPROTOPORPHYRIN IX CONTAINING FE H - 93
1a6m_*_831a6m   *     OXYOXYGEN MOLECULE H - 93
1a6m_*_831a6m   *     HEMPROTOPORPHYRIN IX CONTAINING FE K - 96
1a6m_*_831a6m   *     HEMPROTOPORPHYRIN IX CONTAINING FE H - 97
1a6m_*_831a6m   *     HEMPROTOPORPHYRIN IX CONTAINING FE I - 99
1a6m_*_831a6m   *     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 103
1a6m_*_831a6m   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 104
1a6m_*_831a6m   *     HEMPROTOPORPHYRIN IX CONTAINING FE I - 107
1a6m_*_831a6m   *     OXYOXYGEN MOLECULE I - 107
1a6m_*_831a6m   *     HEMPROTOPORPHYRIN IX CONTAINING FE I - 111
1a9x_A_4861a9x   A     PO4PHOSPHATE ION D - 487
1a9x_A_4861a9x   A     PO4PHOSPHATE ION F - 488
1a9x_A_4861a9x   A     PO4PHOSPHATE ION Q - 491
1d8u_A_981d8u   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 100
1d8u_A_981d8u   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 103
1d8u_A_981d8u   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 107
1d8u_A_981d8u   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 108
1d8u_A_981d8u   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 111
1d8u_A_981d8u   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 113
1d8u_A_981d8u   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 114
1d8u_A_981d8u   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 117
1d8u_A_981d8u   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 118
1d8u_A_981d8u   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 119
1d8u_A_981d8u   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 121
1dc1_A_691dc1   A     DIO1,4-DIETHYLENE DIOXIDE S - 76
1dc1_A_691dc1   A     DIO1,4-DIETHYLENE DIOXIDE I - 78
1dc1_A_691dc1   A     DIO1,4-DIETHYLENE DIOXIDE K - 81
1gvh_A_751gvh   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 80
1gvh_A_751gvh   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 81
1gvh_A_751gvh   A     FADFLAVIN-ADENINE DINUCLEOTIDE K - 84
1gvh_A_751gvh   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 84
1gvh_A_751gvh   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 85
1gvh_A_751gvh   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 88
1gvh_A_751gvh   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 90
1gvh_A_751gvh   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 91
1gvh_A_751gvh   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 94
1gvh_A_751gvh   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 95
1gvh_A_751gvh   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 96
1gvh_A_751gvh   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 98
1khy_A_1201khy   A     MSESELENOMETHIONINE L - 122
1khy_A_1201khy   A     MSESELENOMETHIONINE L - 126
1kw4_A_361kw4   A     MSESELENOMETHIONINE D - 38
1kw4_A_361kw4   A     MSESELENOMETHIONINE F - 39
1kw4_A_361kw4   A     MSESELENOMETHIONINE Q - 42
1kw4_A_361kw4   A     MSESELENOMETHIONINE I - 44
1l6w_A_291l6w   A     GOLGLYCEROL I - 31
1m1n_B_1531m1n   B     CLFFE(8)-S(7) CLUSTER C - 153
1m1n_B_1531m1n   B     CLFFE(8)-S(7) CLUSTER M - 154
1qop_A_621qop   A     IPLINDOLE-3-PROPANOL PHOSPHATE I - 64
1qtm_A_6261qtm   A     TTPTHYMIDINE-5'-TRIPHOSPHATE H - 639
1sct_A_871sct   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 97
1sct_B_891sct   B     HEMPROTOPORPHYRIN IX CONTAINING FE K - 98
1sct_B_891sct   B     HEMPROTOPORPHYRIN IX CONTAINING FE F - 99
1sct_A_871sct   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 100
1sct_A_871sct   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 101
1sct_A_871sct   A     CMOCARBON MONOXIDE H - 101
1sct_B_891sct   B     HEMPROTOPORPHYRIN IX CONTAINING FE N - 102
1sct_B_891sct   B     HEMPROTOPORPHYRIN IX CONTAINING FE H - 103
1sct_B_891sct   B     CMOCARBON MONOXIDE H - 103
1sct_A_871sct   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 104
1sct_A_871sct   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 106
1sct_B_891sct   B     HEMPROTOPORPHYRIN IX CONTAINING FE R - 106
1sct_A_871sct   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 107
1sct_B_891sct   B     HEMPROTOPORPHYRIN IX CONTAINING FE I - 108
1sct_A_871sct   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 110
1sct_A_871sct   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 111
1sct_B_891sct   B     HEMPROTOPORPHYRIN IX CONTAINING FE E - 112
1sct_B_891sct   B     HEMPROTOPORPHYRIN IX CONTAINING FE F - 113
1ujp_A_601ujp   A     CITCITRIC ACID I - 62
3sdh_A_873sdh   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 110
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gvh_A_751gvh   A AC2HEM BINDING SITE FOR CHAIN AI - 81
1gvh_A_751gvh   A AC2HEM BINDING SITE FOR CHAIN AK - 84
1qop_A_621qop   A IPLSUBSTRATE ANALOG BOUND TO THE ALPHA ACTIVE SITE.I - 64

Clusters included in this Subclass
CLUSTER: HH.2.254
CLUSTER: HH.3.40
CLUSTER: HH.4.23
CLUSTER: HH.4.338
CLUSTER: HH.5.55