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Information on SUBCLASS 3.1.8
Subclass Accession number: 4654
Subclass: 3.1.8 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 14.2 +/- 15.8
Average RMSD (Å) : 0.645 +/- 0.207

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXcXXXX
(φψ)-conformation: aalppaa
Pattern: [adegnst][crstwy]xx[ADEQR]x[AGNS]x[depr][afmt][ehkprt][cgilpvy][afilvy][ailtv]
Conservation:0.001-0.529-0.751-0.2540.553-0.4872.927-0.3340.8250.079-0.300-1.3770.078-0.432
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aox_A_2841aox   A284297GYLNRNALDTKNLIHHHHHTT---HHHHaaaaaalxxaaaaa
1bg6_*_3021bg6   -307320ELGRAVNVPTPLIDHHHHHTT---HHHHaaaaaalbxaaaaa
1buc_A_2831buc   A307320ACKKQEGKPFTVDAHHHHHHT---HHHHaaaaaavxwaaaaa
1dxr_M_1111dxr   M133146SRARALGLGTHIAWHHHHHTT--SHHHHaaaaaavbxaaaaa
1htj_F_3841htj   F388401DSRLRNSEDARGVLHHHHHTT---HHHHaaaaaalbxaaaaa
1kqp_A_1861kqp   A191204TLLKELGAPERLYLHHHHHTT--THHHHaaaaaavxxaaaaa
1lf6_A_6001lf6   A608621MYEIAAGKDATPYVHHHHHTT---HHHHaaaaaavbxaaaaa
1lj8_A_3871lj8   A391404NRLIADGRETERAAHHHHHHT---HHHHaaaaaavxpaaaaa
1ug9_A_5931ug9   A600613EYALANGQDALPYLHHHHHTT---HHHHaaaaaavxxaaaaa
2pgd_*_3922pgd   -410423STGVQAGIPMPCFTHHHHHHT---HHHHaaaaaavxwaaaaa
3mdd_A_2923mdd   A316329AWEIDSGRRNTYYAHHHHHTTS--HHHHaaaaaavbpaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aox_A_2841aox   A     MGMAGNESIUM ION Y - 285
1buc_A_2831buc   A     FADFLAVIN-ADENINE DINUCLEOTIDE Q - 283
1buc_A_2831buc   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 287
1buc_A_2831buc   A     CAAACETOACETYL-COENZYME A T - 317
1dxr_M_1111dxr   M     LDALAURYL DIMETHYLAMINE-N-OXIDE W - 112
1dxr_M_1111dxr   M     NS5DIHYDRO-NEUROSPORENE W - 113
1dxr_M_1111dxr   M     NS5DIHYDRO-NEUROSPORENE L - 114
1dxr_M_1111dxr   M     NS5DIHYDRO-NEUROSPORENE G - 117
1dxr_M_1111dxr   M     NS5DIHYDRO-NEUROSPORENE L - 118
1dxr_M_1111dxr   M     BCBBACTERIOCHLOROPHYLL B M - 120
1dxr_M_1111dxr   M     NS5DIHYDRO-NEUROSPORENE M - 120
1dxr_M_1111dxr   M     NS5DIHYDRO-NEUROSPORENE T - 121
1dxr_M_1111dxr   M     LDALAURYL DIMETHYLAMINE-N-OXIDE T - 121
1dxr_M_1111dxr   M     LDALAURYL DIMETHYLAMINE-N-OXIDE L - 122
1dxr_M_1111dxr   M     BCBBACTERIOCHLOROPHYLL B S - 123
1dxr_M_1111dxr   M     BPBBACTERIOPHEOPHYTIN B S - 123
1dxr_M_1111dxr   M     LDALAURYL DIMETHYLAMINE-N-OXIDE S - 123
1dxr_M_1111dxr   M     BCBBACTERIOCHLOROPHYLL B L - 124
1dxr_M_1111dxr   M     BPBBACTERIOPHEOPHYTIN B L - 124
1dxr_M_1111dxr   M     LDALAURYL DIMETHYLAMINE-N-OXIDE L - 124
1dxr_M_1111dxr   M     LDALAURYL DIMETHYLAMINE-N-OXIDE G - 125
1dxr_M_1111dxr   M     LDALAURYL DIMETHYLAMINE-N-OXIDE S - 126
1dxr_M_1111dxr   M     BPBBACTERIOPHEOPHYTIN B W - 127
1dxr_M_1111dxr   M     BPBBACTERIOPHEOPHYTIN B W - 128
1dxr_M_1111dxr   M     LDALAURYL DIMETHYLAMINE-N-OXIDE I - 129
1dxr_M_1111dxr   M     BPBBACTERIOPHEOPHYTIN B V - 131
1dxr_M_1111dxr   M     LDALAURYL DIMETHYLAMINE-N-OXIDE S - 133
1dxr_M_1111dxr   M     BPBBACTERIOPHEOPHYTIN B I - 144
1dxr_M_1111dxr   M     BPBBACTERIOPHEOPHYTIN B A - 145
1dxr_M_1111dxr   M     BPBBACTERIOPHEOPHYTIN B N - 147
1dxr_M_1111dxr   M     BCBBACTERIOCHLOROPHYLL B F - 148
1dxr_M_1111dxr   M     BPBBACTERIOPHEOPHYTIN B F - 148
1dxr_M_1111dxr   M     BCBBACTERIOCHLOROPHYLL B A - 151
1dxr_M_1111dxr   M     BPBBACTERIOPHEOPHYTIN B A - 151
1dxr_M_1111dxr   M     BCBBACTERIOCHLOROPHYLL B I - 152
1dxr_M_1111dxr   M     BCBBACTERIOCHLOROPHYLL B F - 154
1dxr_M_1111dxr   M     BCBBACTERIOCHLOROPHYLL B V - 155
1dxr_M_1111dxr   M     NS5DIHYDRO-NEUROSPORENE V - 155
1dxr_M_1111dxr   M     NS5DIHYDRO-NEUROSPORENE L - 156
1dxr_M_1111dxr   M     BCBBACTERIOCHLOROPHYLL B I - 158
1dxr_M_1111dxr   M     NS5DIHYDRO-NEUROSPORENE I - 158
1dxr_M_1111dxr   M     NS5DIHYDRO-NEUROSPORENE G - 159
1htj_F_3841htj   F     MSESELENOMETHIONINE Q - 384
1htj_F_3841htj   F     MSESELENOMETHIONINE A - 385
1htj_F_3841htj   F     MSESELENOMETHIONINE E - 386
1htj_F_3841htj   F     MSESELENOMETHIONINE I - 387
1htj_F_3841htj   F     MSESELENOMETHIONINE A - 404
1htj_F_3841htj   F     MSESELENOMETHIONINE Q - 405
1htj_F_3841htj   F     MSESELENOMETHIONINE E - 406
1htj_F_3841htj   F     MSESELENOMETHIONINE A - 407
1kqp_A_1861kqp   A     MGMAGNESIUM ION K - 186
1kqp_A_1861kqp   A     ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE K - 186
1kqp_A_1861kqp   A     POPPYROPHOSPHATE 2- K - 186
1ug9_A_5931ug9   A     GOLGLYCEROL L - 593
1ug9_A_5931ug9   A     GOLGLYCEROL L - 594
1ug9_A_5931ug9   A     GOLGLYCEROL S - 595
1ug9_A_5931ug9   A     GOLGLYCEROL E - 597
1ug9_A_5931ug9   A     GOLGLYCEROL R - 598
3mdd_A_2923mdd   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 293
3mdd_A_2923mdd   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 294
3mdd_A_2923mdd   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 348
3mdd_A_2923mdd   A     FADFLAVIN-ADENINE DINUCLEOTIDE Q - 349
3mdd_A_2923mdd   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 350

Clusters included in this Subclass
CLUSTER: HH.4.148
CLUSTER: HH.4.224
CLUSTER: HH.5.162
CLUSTER: HH.5.173
CLUSTER: HH.6.68