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Information on SUBCLASS 3.2.5
Subclass Accession number: 4676
Subclass: 3.2.5 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 24.8 +/- 27.2
Average RMSD (Å) : 0.743 +/- 0.355

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: XhGhXXp
(φψ)-conformation: aagppaa
Pattern: [HKRS][EGQ][AILT][amy]x[ait][FLV][DG][FILTV][PS][agpqt][AEKNS][ESW]x[ailm]x[agi][FILMV][ekqs]
Conservation:0.4790.920-0.103-0.541-1.0540.0730.8672.5310.0901.520-1.372-0.100-0.140-1.239-0.367-1.293-0.5610.603-0.313
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b8d_B_1131b8d   B114132KETYIALGVPTASSSRAVSHHHHHHHT--HHHHHHHHHaaaaaaavxxaaaaaaaaa
1jbo_A_1151jbo   A116134SEINSTFDLSPSWYIEALKHHHHHHHT--HHHHHHHHHaaaaaaalbxaaaaaaaaa
1jbo_B_1151jbo   B116134RETYQALGTPGSSVAVAIQHHHHHHHT--HHHHHHHHHaaaaaaavxxaaaaaaaaa
1jwy_A_3311jwy   A339357RQAMDIVGFSQEEQMSIFKHHHHHHHT--HHHHHHHHHaaaaaaagxxaaaaaaaaa
1phn_B_1151phn   B116134RETYQALGVPGASVAVGIEHHHHHHHT--HHHHHHHHHaaaaaaavxxaaaaaaaaa
1qgw_C_1131qgw   C114132KETYSSLGVPANSNARAVSHHHHHHHT--HHHHHHHHHaaaaaaavxxaaaaaaaaa
1umd_A_981umd   A98116HGLALALGIPLKELLGQMLHHHHHHHT--HHHHHHHHHaaaaaaagxpaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b8d_B_1131b8d   B     PEBPHYCOERYTHROBILIN L - 113
1b8d_B_1131b8d   B     PEBPHYCOERYTHROBILIN T - 116
1b8d_B_1131b8d   B     PEBPHYCOERYTHROBILIN Y - 117
1b8d_B_1131b8d   B     MENN-METHYL ASPARAGINE L - 120
1b8d_B_1131b8d   B     PEBPHYCOERYTHROBILIN L - 120
1b8d_B_1131b8d   B     MENN-METHYL ASPARAGINE G - 121
1b8d_B_1131b8d   B     MENN-METHYL ASPARAGINE V - 122
1b8d_B_1131b8d   B     PEBPHYCOERYTHROBILIN V - 122
1b8d_B_1131b8d   B     MENN-METHYL ASPARAGINE P - 123
1b8d_B_1131b8d   B     PEBPHYCOERYTHROBILIN P - 123
1b8d_B_1131b8d   B     PEBPHYCOERYTHROBILIN T - 124
1b8d_B_1131b8d   B     PEBPHYCOERYTHROBILIN S - 126
1b8d_B_1131b8d   B     PEBPHYCOERYTHROBILIN S - 127
1b8d_B_1131b8d   B     PEBPHYCOERYTHROBILIN S - 128
1b8d_B_1131b8d   B     PUBPHYCOUROBILIN R - 129
1b8d_B_1131b8d   B     PEBPHYCOERYTHROBILIN A - 130
1b8d_B_1131b8d   B     PUBPHYCOUROBILIN S - 132
1b8d_B_1131b8d   B     PUBPHYCOUROBILIN I - 133
1b8d_B_1131b8d   B     PUBPHYCOUROBILIN A - 136
1b8d_B_1131b8d   B     PUBPHYCOUROBILIN T - 137
1b8d_B_1131b8d   B     PUBPHYCOUROBILIN A - 138
1b8d_B_1131b8d   B     PUBPHYCOUROBILIN A - 140
1b8d_B_1131b8d   B     PEBPHYCOERYTHROBILIN F - 141
1b8d_B_1131b8d   B     PUBPHYCOUROBILIN F - 141
1b8d_B_1131b8d   B     PEBPHYCOERYTHROBILIN I - 142
1jbo_A_1151jbo   A     CYCPHYCOCYANOBILIN L - 115
1jbo_A_1151jbo   A     CYCPHYCOCYANOBILIN I - 118
1jbo_B_1151jbo   B     CYCPHYCOCYANOBILIN T - 118
1jbo_B_1151jbo   B     CYCPHYCOCYANOBILIN Y - 119
1jbo_A_1151jbo   A     CYCPHYCOCYANOBILIN F - 122
1jbo_B_1151jbo   B     MENN-METHYL ASPARAGINE L - 122
1jbo_B_1151jbo   B     CYCPHYCOCYANOBILIN L - 122
1jbo_B_1151jbo   B     MENN-METHYL ASPARAGINE G - 123
1jbo_A_1151jbo   A     CYCPHYCOCYANOBILIN L - 124
1jbo_B_1151jbo   B     MENN-METHYL ASPARAGINE T - 124
1jbo_B_1151jbo   B     CYCPHYCOCYANOBILIN T - 124
1jbo_B_1151jbo   B     MENN-METHYL ASPARAGINE P - 125
1jbo_B_1151jbo   B     CYCPHYCOCYANOBILIN P - 125
1jbo_A_1151jbo   A     CYCPHYCOCYANOBILIN W - 128
1jbo_B_1151jbo   B     CYCPHYCOCYANOBILIN S - 128
1jbo_A_1151jbo   A     CYCPHYCOCYANOBILIN Y - 129
1jbo_B_1151jbo   B     CYCPHYCOCYANOBILIN V - 129
1jbo_A_1151jbo   A     CYCPHYCOCYANOBILIN A - 132
1jbo_B_1151jbo   B     CYCPHYCOCYANOBILIN A - 144
1phn_B_1151phn   B     CYCPHYCOCYANOBILIN V - 124
1phn_B_1151phn   B     MENN-METHYL ASPARAGINE V - 124
1phn_B_1151phn   B     CYCPHYCOCYANOBILIN G - 132
1qgw_C_1131qgw   C     LYZ5-HYDROXYLYSINE T - 116
1qgw_C_1131qgw   C     PEBPHYCOERYTHROBILIN N - 127
1qgw_C_1131qgw   C     PEBPHYCOERYTHROBILIN R - 129
1qgw_C_1131qgw   C     PEBPHYCOERYTHROBILIN S - 132
1qgw_C_1131qgw   C     PEBPHYCOERYTHROBILIN I - 133
1qgw_C_1131qgw   C     PEBPHYCOERYTHROBILIN A - 136
1qgw_C_1131qgw   C     PEBPHYCOERYTHROBILIN C - 137
1qgw_C_1131qgw   C     PEBPHYCOERYTHROBILIN A - 138
1qgw_C_1131qgw   C     PEBPHYCOERYTHROBILIN A - 140
1qgw_C_1131qgw   C     PEBPHYCOERYTHROBILIN V - 142
1qgw_C_1131qgw   C     PEBPHYCOERYTHROBILIN N - 143

Clusters included in this Subclass
CLUSTER: HH.2.102