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Information on SUBCLASS 3.2.6
Subclass Accession number: 4677
Subclass: 3.2.6 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 13.8 +/- 13.1
Average RMSD (Å) : 0.880 +/- 0.327

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XpGhphp
(φψ)-conformation: aagppaa
Pattern: [KNTY]xx[ar][ASTV][HV]x[AEKL][dgq][aiv][AILM]x[DEGRT]x[adgr]x[aikl][AFIL][LV][ADK][ADQT][GN]x[DHNS]x[emqr]x[AILV][eklm][AEKR][GLV][aik]
Conservation:-0.151-0.221-0.2980.2630.5701.065-0.184-0.502-0.286-0.1680.740-0.828-0.581-1.341-1.475-1.147-0.9830.3431.9470.0410.0283.5160.2861.059-0.558-0.000-1.0280.879-0.6260.602-0.124-0.837
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1j3v_A_1601j3v   A169200NALLAVNLWAAGEGLLALVKQGVSAEKALEVIHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHaaaaaaaaaaaaaaaaaaaaavxxaaaaaaaa
1kp8_A_891kp8   A89120TTTATVLAQAIITEGLKAVAAGMNPMDLKRGIHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHaaaaaaaaaaaaaaaaaaaaagxxaaaaaaaa
1nvp_B_101nvp   B1243KLYRSVIEDVINDVRDIFLDDGVDEQVLMELKHHHHHHHHHHHHHHHHHHHHHT--HHHHHHHHaaaaaaaaaaaaaaaaaaaaavxpaaaaaaaa
1q3q_A_971q3q   A97128TTTAVVIAGELLRKAEELLDQNIHPSIITKGYHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHaaaaaaaaaaaaaaaaaaaaavxxaaaaaaaa
1r7i_A_2591r7i   A260291YRAATHNKGIMNGIDPLIVATGNDWRAVEAGAHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHaaaaaaaaaaaaaaaaaaaaavxxaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1j3v_A_1601j3v   A     MSESELENOMETHIONINE A - 160
1j3v_A_1601j3v   A     MSESELENOMETHIONINE G - 161
1j3v_A_1601j3v   A     MSESELENOMETHIONINE H - 162
1j3v_A_1601j3v   A     MSESELENOMETHIONINE V - 164
1j3v_A_1601j3v   A     MSESELENOMETHIONINE K - 165
1j3v_A_1601j3v   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE K - 165
1j3v_A_1601j3v   A     MSESELENOMETHIONINE A - 166
1j3v_A_1601j3v   A     MSESELENOMETHIONINE N - 168
1j3v_A_1601j3v   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE N - 169
1j3v_A_1601j3v   A     MSESELENOMETHIONINE A - 170
1j3v_A_1601j3v   A     MSESELENOMETHIONINE W - 177
1j3v_A_1601j3v   A     MSESELENOMETHIONINE V - 199
1kp8_A_891kp8   A     ATPADENOSINE-5'-TRIPHOSPHATE T - 89
1kp8_A_891kp8   A     KO4POTASSIUM ION, 4 WATERS COORDINATED T - 89
1kp8_A_891kp8   A     ATPADENOSINE-5'-TRIPHOSPHATE T - 90
1kp8_A_891kp8   A     KO4POTASSIUM ION, 4 WATERS COORDINATED T - 90
1kp8_A_891kp8   A     ATPADENOSINE-5'-TRIPHOSPHATE T - 91
1kp8_A_891kp8   A     ATPADENOSINE-5'-TRIPHOSPHATE A - 92
1q3q_A_971q3q   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER T - 97
1q3q_A_971q3q   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER T - 98
1q3q_A_971q3q   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER T - 99
1q3q_A_971q3q   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER A - 100
1r7i_A_2591r7i   A     GOLGLYCEROL R - 261
1r7i_A_2591r7i   A     GOLGLYCEROL T - 264
1r7i_A_2591r7i   A     GOLGLYCEROL H - 265
1r7i_A_2591r7i   A     GOLGLYCEROL K - 267
1r7i_A_2591r7i   A     GOLGLYCEROL G - 268
1r7i_A_2591r7i   A     GOLGLYCEROL I - 269
1r7i_A_2591r7i   A     GOLGLYCEROL N - 271

Clusters included in this Subclass
CLUSTER: HH.3.119