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Information on SUBCLASS 3.3.5
Subclass Accession number: 4684
Subclass: 3.3.5 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 11.3 +/- 11.7
Average RMSD (Å) : 0.743 +/- 0.282

Consensus geometry
d (Å): 11 delta (°): 0-45 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXXXXXX
(φψ)-conformation: aapapaa
Pattern: x[FGILV][AIL][fklv][ALMV]xxx[EKPT][cden][dgkqs][CEQW][cdekst][akrs]x[hknsy]x[fiklv]x[giltv][FGIL]x
Conservation:-0.7370.6312.222-0.2281.439-0.620-0.938-0.8152.3680.320-0.5870.963-0.9690.395-0.856-0.425-0.936-0.370-0.497-0.3780.590-0.571
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1f7c_A_2751f7c   A280301SFIKAAKLENQESRVSEIHSLVHHHHHHT-SSHHHHHHHHHHHHaaaaaaapaxaaaaaaaaaaaa
1hn0_A_4501hn0   A453474HLALLLLEPDDQKRINLVNTFSHHHHHHT-SSHHHHHHHHHHHHaaaaaaapaxaaaaaaaaaaaa
1jr8_A_351jr8   A4566IGLYAELYPCGECSYHFVKLIEHHHHHHH-SSHHHHHHHHHHHHaaaaaaapabaaaaaaaaaaaa
1js8_A_26461js8   A26502671QIALALEQTDFCDFEIQFEIGHHHHHHHH--SHHHHHHHHHHHHaaaaaaaxabaaaaaaaaaaaa
1m0u_A_1281m0u   A147168KIAVVSYEPEDEIKEKKLVTLNHHHHHHT-SSHHHHHHHHHHHHaaaaaaapaxaaaaaaaaaaaa
1mty_G_871mty   G94115TVAKMNAAKDKWEAEKIHIGFRHHHHHHH--SHHHHHHHHHHHHaaaaaaapabaaaaaaaaaaaa
1qsa_A_5721qsa   A572593AVAFVESIPFSETRGYVKNVLAHHHHHHH-S-HHHHHHHHHHHHaaaaaaapaxaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1jr8_A_351jr8   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 48
1jr8_A_351jr8   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 52
1jr8_A_351jr8   A     FADFLAVIN-ADENINE DINUCLEOTIDE C - 54
1jr8_A_351jr8   A     FADFLAVIN-ADENINE DINUCLEOTIDE E - 56
1jr8_A_351jr8   A     FADFLAVIN-ADENINE DINUCLEOTIDE C - 57
1jr8_A_351jr8   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 58
1jr8_A_351jr8   A     FADFLAVIN-ADENINE DINUCLEOTIDE H - 60
1jr8_A_351jr8   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 61
1js8_A_26461js8   A     CUOCU2-O2 CLUSTER H - 2671
1js8_A_26461js8   A     CUOCU2-O2 CLUSTER N - 2672
1js8_A_26461js8   A     CUOCU2-O2 CLUSTER H - 2675
1m0u_A_1281m0u   A     GTTGLUTATHIONE N - 142
1m0u_A_1281m0u   A     GTTGLUTATHIONE R - 145
1qsa_A_5721qsa   A     GOLGLYCEROL A - 572
1qsa_A_5721qsa   A     GOLGLYCEROL V - 573
1qsa_A_5721qsa   A     GOLGLYCEROL A - 574
1qsa_A_5721qsa   A     GOLGLYCEROL Y - 587
1qsa_A_5721qsa   A     GOLGLYCEROL Y - 594
1qsa_A_5721qsa   A     GOLGLYCEROL D - 595
1qsa_A_5721qsa   A     GOLGLYCEROL A - 596
1qsa_A_5721qsa   A     GOLGLYCEROL R - 599

Clusters included in this Subclass
CLUSTER: HH.3.86