Logo
Information on SUBCLASS 3.4.2
Subclass Accession number: 4694
Subclass: 3.4.2 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 15

Average sequence ID (%) : 10.8 +/- 14.3
Average RMSD (Å) : 0.893 +/- 0.231

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 45-90 rho (°): 225-270
Consensus Sequence: XXXXXhX
(φψ)-conformation: aalbpaa
Pattern: x[dgknrst]xx[gkl]x[adnpst]xxx[alwy]
Conservation:-0.7700.340-0.1190.5520.8220.1512.160-1.533-0.598-0.946-0.059
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bl0_A_911bl0   A99109KNYFDVPPHKYHHHHSS-HHHHaaaavbxaaaa
1f7c_A_3261f7c   A326336HKQNLMTVANLHHHH---HHHHaaaavxxaaaa
1fxx_A_611fxx   A6474VLITGITPQEAHHHH---HHHHaaaavbxaaaa
1gmz_A_21gmz   A1020LKETGKLPFPYHHHHSS-HHHHaaaavbxaxwa
1gvj_A_4181gvj   A419429QSLLGYTPEELHHHHS--HHHHaaaavbxaaaa
1j54_A_601j54   A6373FGVHGIADEFLHHHH---HHHHaaaavxxaaaa
1m8r_A_21m8r   A1020MKVAKKSGMQWHHHT-S-HHHHaaaavbxaaaa
1mtp_A_521mtp   A5969TTLLGTDPAPLHHHHTS-HHHHaaaavbxaaaa
1n00_A_2811n00   A289299QRRNSVPLTRAHHHHSS-HHHHaaaavbxaaaa
1ndy_A_2971ndy   A297307PLIFKSTLDTDHHHHT--HHHHaaaalbbaaaa
1pbw_A_2541pbw   A254264SSKNLLNARVLHHHH---HHHHaaaavxxaaaa
1qzz_A_1371qzz   A138148AGRYGRPFWEDHHHHSS-HHHHaaaagbxaaaa
1s5u_A_251s5u   A4050LRHHHFSQQALHHHTT--HHHHaaaavbbaaaa
1tx4_A_1851tx4   A185195SDQNKMTNTNLHHHH---HHHHaaaavbxaaaa
1vap_A_21vap   A1020KKMTGKSGMLWHHHHSS-HHHHaaaavbxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gmz_A_21gmz   A     IOH2-PROPANOL, ISOPROPANOL F - 5
1gmz_A_21gmz   A     IOH2-PROPANOL, ISOPROPANOL I - 9
1gmz_A_21gmz   A     IOH2-PROPANOL, ISOPROPANOL P - 17
1j54_A_601j54   A     TMPTHYMIDINE-5'-PHOSPHATE E - 61
1j54_A_601j54   A     TMPTHYMIDINE-5'-PHOSPHATE A - 62
1j54_A_601j54   A     TMPTHYMIDINE-5'-PHOSPHATE V - 65
1j54_A_601j54   A     TMPTHYMIDINE-5'-PHOSPHATE H - 66
1m8r_A_21m8r   A     BU11,4-BUTANEDIOL L - 2
1m8r_A_21m8r   A     BU11,4-BUTANEDIOL F - 5
1m8r_A_21m8r   A     BU11,4-BUTANEDIOL E - 6
1m8r_A_21m8r   A     BU11,4-BUTANEDIOL I - 9
1ndy_A_2971ndy   A     FR31-((1R)-1-(HYDROXYMETHYL)-3-(1-NAPHTHYL)PROPYL)-1H-IMIDAZOLE-4-CARBOXAMIDE I - 299
1ndy_A_2971ndy   A     FR31-((1R)-1-(HYDROXYMETHYL)-3-(1-NAPHTHYL)PROPYL)-1H-IMIDAZOLE-4-CARBOXAMIDE F - 300
1qzz_A_1371qzz   A     SAMS-ADENOSYLMETHIONINE W - 146
1qzz_A_1371qzz   A     SAMS-ADENOSYLMETHIONINE S - 150
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gmz_A_21gmz   A AC1IOH BINDING SITE FOR CHAIN AF - 5

Clusters included in this Subclass
CLUSTER: HH.2.176
CLUSTER: HH.2.87
CLUSTER: HH.3.95
CLUSTER: HH.4.46