ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.4.9

Subclass Accession number: 4701
Subclass: 3.4.9

PSSM

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 5

Average sequence ID (%) : 25.4 +/- 24.0
Average RMSD (Å) : 0.680 +/- 0.130

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 90-135

rho (°): 0-45

Consensus Sequence:	XXGXXhX
(φψ)-conformation:	aalbpaa

Pattern:	[amt]	[sty]	[HKQY]	[AQST]	[LT]	[G]	[FLTV]	[DP]	[GIM]	[AEPS]	[AEGKS]	[lv]	[ae]
Conservation:	-0.256	-0.624	-0.091	-0.221	0.170	3.050	-0.461	0.858	-0.524	-0.376	-0.565	-0.395	-0.564

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a8i_*_105	1a8i	-	111	123	ATYQLGLDMEELE	HHHHTT--HHHHH	aaaaavbbaaaaa
1a9x_A_306	1a9x	A	311	323	ASKATGFPIAKVA	HHHHHS--HHHHH	aaaaavbxaaaaa
1jbo_B_115	1jbo	B	118	130	TYQALGTPGSSVA	HHHHHT--HHHHH	aaaaavxxaaaaa
1kn1_A_115	1kn1	A	118	130	MYKSLGTPISAVA	HHHHHT--HHHHH	aaaaavxxaaaaa
1uc8_A_259	1uc8	A	259	271	SVHTTGVDIPGEI	HHHHH---HHHHH	aaaaavbxaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1a9x_A_306	1a9x	A	ADPADENOSINE-5'-DIPHOSPHATE	R - 306
1a9x_A_306	1a9x	A	MNMANGANESE (II) ION	R - 306
1a9x_A_306	1a9x	A	PO4PHOSPHATE ION	R - 306
1a9x_A_306	1a9x	A	PO4PHOSPHATE ION	S - 307
1jbo_B_115	1jbo	B	CYCPHYCOCYANOBILIN	L - 115
1jbo_B_115	1jbo	B	CYCPHYCOCYANOBILIN	T - 118
1jbo_B_115	1jbo	B	CYCPHYCOCYANOBILIN	Y - 119
1jbo_B_115	1jbo	B	MENN-METHYL ASPARAGINE	L - 122
1jbo_B_115	1jbo	B	CYCPHYCOCYANOBILIN	L - 122
1jbo_B_115	1jbo	B	MENN-METHYL ASPARAGINE	G - 123
1jbo_B_115	1jbo	B	MENN-METHYL ASPARAGINE	T - 124
1jbo_B_115	1jbo	B	CYCPHYCOCYANOBILIN	T - 124
1jbo_B_115	1jbo	B	MENN-METHYL ASPARAGINE	P - 125
1jbo_B_115	1jbo	B	CYCPHYCOCYANOBILIN	P - 125
1jbo_B_115	1jbo	B	CYCPHYCOCYANOBILIN	S - 128
1jbo_B_115	1jbo	B	CYCPHYCOCYANOBILIN	V - 129
1jbo_B_115	1jbo	B	CYCPHYCOCYANOBILIN	A - 132
1jbo_B_115	1jbo	B	CYCPHYCOCYANOBILIN	A - 144
1kn1_A_115	1kn1	A	CYCPHYCOCYANOBILIN	M - 118
1kn1_A_115	1kn1	A	CYCPHYCOCYANOBILIN	A - 128
1kn1_A_115	1kn1	A	CYCPHYCOCYANOBILIN	G - 132

Clusters included in this Subclass

CLUSTER: HH.4.144