ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.5.3

Subclass Accession number: 4706
Subclass: 3.5.3

PSSM

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 7

Average sequence ID (%) : 13.4 +/- 15.5
Average RMSD (Å) : 0.914 +/- 0.248

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	XXhXcXX
(φψ)-conformation:	aapabaa

Pattern:	[aerst]	[AKNS]	[cfilm]	x	[AKNR]	[acfy]	x	[DHN]	x	[ehrw]	[ader]	[AFK]	x	[ekr]	x	[hilmv]	x
Conservation:	-0.415	0.690	-0.193	-0.387	0.847	-0.098	-1.243	2.857	-1.127	-0.083	-0.320	0.934	-0.878	0.733	-1.068	-0.141	-0.106

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1i4n_A_232	1i4n	A	232	248	TSIMKAENPRRFLEEMR	HHHHH-SSHHHHHHHHH	aaaaapabaaaaaaaaa
1k32_A_682	1k32	A	696	712	LARDNYWNEAVAKEISE	HHHHH-S-HHHHHHHHH	aaaaapabaaaaaaaaa
1mty_G_87	1mty	G	96	112	AKMNAAKDKWEAEKIHI	HHHHH--SHHHHHHHHH	aaaaapabaaaaaaaaa
1mzg_A_7	1mzg	A	12	28	RNFLRCANWEEKYLYII	HHHHH-SSHHHHHHHHH	aaaaapabaaaaaaaaa
1pii_*_237	1pii	-	237	253	SALMAHDDLHAAVRRVL	HHHHT-S-HHHHHHHHH	aaaaabaxaaaaaaaaa
1qr0_A_26	1qr0	A	30	46	EKCRRFYHKEDAHRTLL	HHHHH-SSHHHHHHHHH	aaaaaxaxaaaaaaaaa
1vc4_A_237	1vc4	A	237	253	TSLMRAPDLEAALRELV	HHHHTSS-HHHHHHHHH	aaaaaxabaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1i4n_A_232	1i4n	A	SULSULFATE ANION	T - 232
1i4n_A_232	1i4n	A	SULSULFATE ANION	S - 233
1mzg_A_7	1mzg	A	MSESELENOMETHIONINE	K - 7
1mzg_A_7	1mzg	A	MSESELENOMETHIONINE	L - 10
1mzg_A_7	1mzg	A	MSESELENOMETHIONINE	L - 11
1mzg_A_7	1mzg	A	MSESELENOMETHIONINE	F - 14
1mzg_A_7	1mzg	A	MSESELENOMETHIONINE	L - 15
1mzg_A_7	1mzg	A	MSESELENOMETHIONINE	W - 20
1mzg_A_7	1mzg	A	MSESELENOMETHIONINE	K - 23
1mzg_A_7	1mzg	A	MSESELENOMETHIONINE	I - 27
1pii_*_237	1pii	*	PO4PHOSPHATE ION	S - 237
1pii_*_237	1pii	*	PO4PHOSPHATE ION	A - 238
1qr0_A_26	1qr0	A	COACOENZYME A	K - 28
1qr0_A_26	1qr0	A	COACOENZYME A	K - 31
1qr0_A_26	1qr0	A	COACOENZYME A	F - 35
1qr0_A_26	1qr0	A	COACOENZYME A	R - 43
1qr0_A_26	1qr0	A	COACOENZYME A	T - 44
1qr0_A_26	1qr0	A	COACOENZYME A	L - 45
1qr0_A_26	1qr0	A	COACOENZYME A	G - 47

Clusters included in this Subclass

CLUSTER: HH.4.106