ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.5.9

Subclass Accession number: 4712
Subclass: 3.5.9

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
SCOP : 47161 (>50 %) 69000 (>50 %) 69001 (>50 %)

Number of loops: 3

Average sequence ID (%) : 13.6 +/- 19.7
Average RMSD (Å) : 0.933 +/- 0.321

Consensus geometry

d (Å): 9

delta (°): 0-45

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	XXpXXXX
(φψ)-conformation:	aapabaa

Pattern:	[FLM]	x	[QTY]	[FR]	x	x	[AIL]	[FLY]	[AS]	[EKL]	[EFL]	[QY]	[PT]	[CD]	x	[CE]	[CD]	x	[EY]	x	x	x	[EK]	x	[GI]	[DEH]	[KNR]
Conservation:	0.588	-0.567	-0.462	0.164	-0.584	-1.407	-0.147	0.798	1.116	-0.777	-1.092	1.420	1.420	1.416	-1.302	-0.131	1.416	-0.567	0.593	-0.987	-1.092	-1.302	1.554	-0.672	-0.895	0.798	0.693

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1jr8_A_35	1jr8	A	41	67	LHTFIGLYAELYPCGECSYHFVKLIEK	HHHHHHHHHHH-SSHHHHHHHHHHHHH	aaaaaaaaaaapabaaaaaaaaaaaaa
1js8_A_2646	1js8	A	2646	2672	FFYRQIALALEQTDFCDFEIQFEIGHN	HHHHHHHHHHH--SHHHHHHHHHHHHH	aaaaaaaaaaaxabaaaaaaaaaaaaa
1oqc_A_43	1oqc	A	49	75	MAQFIHIFSKFYPCEECAEDIRKRIDR	HHHHHHHHHHH-S-HHHHHHHHHHHHH	aaaaaaaaaaapabaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1jr8_A_35	1jr8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	Y - 48
1jr8_A_35	1jr8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	Y - 52
1jr8_A_35	1jr8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	C - 54
1jr8_A_35	1jr8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	E - 56
1jr8_A_35	1jr8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	C - 57
1jr8_A_35	1jr8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	S - 58
1jr8_A_35	1jr8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	H - 60
1jr8_A_35	1jr8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	F - 61
1js8_A_2646	1js8	A	CUOCU2-O2 CLUSTER	H - 2671
1js8_A_2646	1js8	A	CUOCU2-O2 CLUSTER	N - 2672
1js8_A_2646	1js8	A	CUOCU2-O2 CLUSTER	H - 2675
1oqc_A_43	1oqc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	F - 56
1oqc_A_43	1oqc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	Y - 60
1oqc_A_43	1oqc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	C - 62
1oqc_A_43	1oqc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	E - 64
1oqc_A_43	1oqc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	C - 65
1oqc_A_43	1oqc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	A - 66
1oqc_A_43	1oqc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	D - 68
1oqc_A_43	1oqc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	I - 69

PDB Site Annotated loops in this subclass

Clusters included in this Subclass