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Information on SUBCLASS 3.8.1
Subclass Accession number: 4723
Subclass: 3.8.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 10.2 +/- 12.6
Average RMSD (Å) : 0.782 +/- 0.218

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 0-45 rho (°): 0-45
Consensus Sequence: hXXhpXp
(φψ)-conformation: aapppaa
Pattern: [dekqy]x[ailmv]x[agklm]xx[alptv][DNSTV]x[ehknqs][aekqrt]xx[adekr]
Conservation:-0.005-0.5081.441-0.423-0.784-0.9230.0800.8692.321-1.4720.6570.495-0.674-0.528-0.545
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1g55_A_3661g55   A370384YRLLGNSLNVHVVAKHHHHHHS--HHHHHHaaaaaaxbxaaaaaa
1g8q_A_1811g8q   A181195IISNLFKEDCHQKIDHHHHHTS--HHHHHHaaaaaabxxaaaaaa
1gwc_A_2031gwc   A203217DAAKAALPDVGRLLEHHHHHHS--HHHHHHaaaaaaxxxaaaaaa
1hy0_A_191hy0   A1933PIMQMLSTSISTEQRHHHHHTS--HHHHHHaaaaaaxpxaaaaaa
1jjv_A_1491jjv   A153167QRIMNSQVSQQERLKHHHHHHS--HHHHHHaaaaaabpxaaaaaa
1lox_*_5741lox   -575589ETVMATLPNLKQSSLHHHHHHS--HHHHHHaaaaaappxaaaaaa
1n0u_A_3301n0u   A336350EMIVLHLPSPVTAQAHHHHHHS--HHHHHHaaaaaaxxxaaaaaa
1oyj_A_2051oyj   A205219DSVVKHLPSPEKVYDHHHHHH---HHHHHHaaaaaaxwxaaaaaa
1r89_A_31r89   A923KALELVIPDEEEVRKHHHHHHS--HHHHHHaaaaaaxxxaaaaaa
1vht_A_1491vht   A153167EQILAAQATREARLAHHHHHHS--HHHHHHaaaaaaxpxaaaaaa
6mht_A_2956mht   A299313YKQFGNSVVINVLQYHHHHHH---HHHHHHaaaaaaxbxaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1g55_A_3661g55   A     SAHS-ADENOSYL-L-HOMOCYSTEINE L - 372
1g55_A_3661g55   A     SAHS-ADENOSYL-L-HOMOCYSTEINE N - 375
1g55_A_3661g55   A     SAHS-ADENOSYL-L-HOMOCYSTEINE S - 376
1g55_A_3661g55   A     SAHS-ADENOSYL-L-HOMOCYSTEINE L - 377
1gwc_A_2031gwc   A     GTXS-HEXYLGLUTATHIONE F - 218
1gwc_A_2031gwc   A     GTXS-HEXYLGLUTATHIONE R - 222
1lox_*_5741lox   *     RS73-(2-OCTYLPHENYL)PROPANOIC ACID Q - 590
1lox_*_5741lox   *     RS73-(2-OCTYLPHENYL)PROPANOIC ACID I - 593
1lox_*_5741lox   *     RS73-(2-OCTYLPHENYL)PROPANOIC ACID V - 594
1oyj_A_2051oyj   A     GOLGLYCEROL P - 214
1vht_A_1491vht   A     BA3BIS(ADENOSINE)-5'-TRIPHOSPHATE H - 151
1vht_A_1491vht   A     BA3BIS(ADENOSINE)-5'-TRIPHOSPHATE I - 155
1vht_A_1491vht   A     BA3BIS(ADENOSINE)-5'-TRIPHOSPHATE Q - 159
6mht_A_2956mht   A     SAMS-ADENOSYLMETHIONINE Q - 301
6mht_A_2956mht   A     4SC4'-THIO-2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE GROUP G - 303
6mht_A_2956mht   A     4SC4'-THIO-2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE GROUP N - 304
6mht_A_2956mht   A     SAMS-ADENOSYLMETHIONINE N - 304
6mht_A_2956mht   A     4SC4'-THIO-2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE GROUP S - 305
6mht_A_2956mht   A     SAMS-ADENOSYLMETHIONINE S - 305
6mht_A_2956mht   A     4SC4'-THIO-2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE GROUP V - 306
6mht_A_2956mht   A     SAMS-ADENOSYLMETHIONINE V - 306

Clusters included in this Subclass
CLUSTER: HH.3.74