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Information on SUBCLASS 2.2.4
Subclass Accession number: 474
Subclass: 2.2.4 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 46

Average sequence ID (%) : 6.9 +/- 11.3
Average RMSD (Å) : 0.430 +/- 0.221

Consensus geometry
d (Å): 5 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXXpXX
(φψ)-conformation: bbaabb
Pattern: xx[adegnqst]x[dehnqrstwy]xxx
Conservation:-0.348-0.5022.0500.4510.562-0.952-0.951-0.310
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a1v_A_2511a1v   A252259IRTGVRTIEE-SS-EEbbbaabbb
1c8u_A_741c8u   A8289RDGNSFSAEE-SSEEEbbbaabbb
1cb8_A_6011cb8   A604611ANTNQLQAEESSSEEEbbbaabbb
1chm_A_3291chm   A329334.LSHYYG..EETTEE..bbaabe.
1d2s_A_751d2s   A8087LHNHWAQLEESSS-EEbbbaabbb
1d7p_M_21961d7p   M21962203FTNMFATWEEETTEEExbbaabbx
1dgw_X_2581dgw   X258265YSNNYGKLEE-SSEEEbbxaabbb
1ecs_A_271ecs   A3037FRDAGWMIEE-SSEEEbbbaabbb
1ei5_A_5001ei5   A505512VGCWLARGEEETTEEEbbbaabxl
1ex2_A_1001ex2   A109116IQAENHSEEEETTEEEbbbaabbb
1f94_A_461f94   A4653IDTWNVYNEESSSEEEbbbaabbb
1f9y_A_1061f9y   A106113INTERLTVEE-SS-EEbbbaabbb
1gpj_A_411gpj   A4552LQTSNRVEEEETTEEEbbbaabbb
1h54_A_1871h54   A193200DQQADRGSEE-SSEEEbbbaabbb
1hn0_A_9001hn0   A904911RKDKDVHIEESSSEEEbbbaabbb
1j0m_A_6621j0m   A666673VNTSGVQSEESSSEEEbbbaabbb
1jce_A_51jce   A916DLGTANTLEE-SSEEEbxxaabbb
1jni_A_511jni   A5156.VTKNVN..EETTEE..bbaabb.
1jov_A_971jov   A102109YISVHKVREEETTEEEbbbaabbb
1jp4_A_381jp4   A4047KTSATDLQEEETTEEEFabaabbb
1k32_A_1261k32   A127133KSTGRRM.EEETTEE.xbbaabx.
1k55_A_1931k55   A195202EAAPEYLVEEETTEEEbbbaabbb
1luc_A_1431luc   A146153ADNEHIKFEESSS-EEbbbaabbb
1lur_A_11041lur   A11071114RHAPESVSEEETTEEEbbbaabbb
1mbm_A_1001mbm   A105112LLSGEVCLEE-SS-EExbbaabbb
1n6m_A_4461n6m   A446451.GVPESV..EETTEE..ebaabx.
1n7o_A_8171n7o   A819826ENNETLQSEESSSEEEbbbaabbb
1nbc_A_741nbc   A8390SSTNNADTEEETTEEEbbbaabab
1nc7_A_931nc7   A97104DVGKNHYTEEETTEEEbbbaabbb
1nkr_*_1731nkr   -179186GSFHDSPYEEETTEEEbbbaabaa
1nqk_A_1481nqk   A150157FNGKHIHVEE-SS-EEbbbaaxbb
1oi2_A_3591oi2   A359366VHTPALNWEESSS-EEbbbaabbb
1ou8_A_601ou8   A6370QLTNDFIQEE-SSEEEbbbaabbb
1pam_A_5411pam   A543550AWEDTQIQEE-SSEEEbbbaabbb
1pl3_A_1091pl3   A109116TINSTHWKEE-SSEEEbbbaabbb
1pp7_U_1101pp7   U110115.FTRNSV..EETTEE..bbaabb.
1qft_A_1071qft   A114121YSDDNCDVEEETTEEEbbbaabbb
1qwr_A_2371qwr   A243250VQGEYFSVEE-SS-EEbbbaabbb
1r6t_A_841r6t   A8491FVDPWTVQEESSS-EEbbbaabbb
1rhc_A_1461rhc   A148155FKGDYFTLEE-SS-EEbbxaabbb
1rwh_A_6461rwh   A650657RNDATAQSEESSSEEEbbbaabbb
1s16_A_12331s16   A12421249FAGDTEAVEE-SSEEEbbbaabbb
1svb_*_3631svb   -363369TIENNGG.EEETTEE.bbxaabe.
1uhv_A_3601uhv   A363370YRDEHMLVEEETTEEEbbbaabbb
1ux6_A_10041ux6   A10111018YQSSSRFYEEETTEEExabaabbx
2pva_A_2882pva   A291298FKLYDNSREEETTEEEbbbaabax
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d2s_A_751d2s   A     DHTDIHYDROTESTOSTERONE L - 80
1d2s_A_751d2s   A     DHTDIHYDROTESTOSTERONE H - 81
1d2s_A_751d2s   A     DHTDIHYDROTESTOSTERONE N - 82
1d2s_A_751d2s   A     CACALCIUM ION H - 83
1d2s_A_751d2s   A     DHTDIHYDROTESTOSTERONE H - 83
1d2s_A_751d2s   A     DHTDIHYDROTESTOSTERONE W - 84
1d7p_M_21961d7p   M     GOLGLYCEROL F - 2196
1d7p_M_21961d7p   M     GOLGLYCEROL N - 2198
1d7p_M_21961d7p   M     GOLGLYCEROL F - 2200
1d7p_M_21961d7p   M     GOLGLYCEROL A - 2201
1d7p_M_21961d7p   M     GOLGLYCEROL W - 2203
1dgw_X_2581dgw   X     PO4PHOSPHATE ION L - 265
1dgw_X_2581dgw   X     PO4PHOSPHATE ION E - 267
1ecs_A_271ecs   A     PG4TETRAETHYLENE GLYCOL V - 29
1ecs_A_271ecs   A     PG4TETRAETHYLENE GLYCOL F - 30
1ecs_A_271ecs   A     PG4TETRAETHYLENE GLYCOL W - 35
1ecs_A_271ecs   A     PG4TETRAETHYLENE GLYCOL I - 37
1ecs_A_271ecs   A     PG4TETRAETHYLENE GLYCOL Q - 39
1ex2_A_1001ex2   A     PO4PHOSPHATE ION Q - 110
1ex2_A_1001ex2   A     PO4PHOSPHATE ION S - 115
1ex2_A_1001ex2   A     PO4PHOSPHATE ION T - 117
1f9y_A_1061f9y   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER E - 109
1f9y_A_1061f9y   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER R - 110
1f9y_A_1061f9y   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER L - 111
1f9y_A_1061f9y   A     ACTACETATE ION T - 112
1f9y_A_1061f9y   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER T - 112
1f9y_A_1061f9y   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER V - 113
1gpj_A_411gpj   A     GMC(2R,3R,4S,5S)-4-AMINO-2-[6-(DIMETHYLAMINO)-9H-PURIN-9-YL]-5-(HYDROXYMETHYL)TETRAHYDRO-3-FURANOL T - 47
1gpj_A_411gpj   A     GLUGLUTAMIC ACID T - 47
1gpj_A_411gpj   A     GMC(2R,3R,4S,5S)-4-AMINO-2-[6-(DIMETHYLAMINO)-9H-PURIN-9-YL]-5-(HYDROXYMETHYL)TETRAHYDRO-3-FURANOL S - 48
1gpj_A_411gpj   A     GLUGLUTAMIC ACID S - 48
1gpj_A_411gpj   A     GMC(2R,3R,4S,5S)-4-AMINO-2-[6-(DIMETHYLAMINO)-9H-PURIN-9-YL]-5-(HYDROXYMETHYL)TETRAHYDRO-3-FURANOL N - 49
1gpj_A_411gpj   A     GLUGLUTAMIC ACID N - 49
1gpj_A_411gpj   A     GLUGLUTAMIC ACID R - 50
1j0m_A_6621j0m   A     CACALCIUM ION I - 662
1jce_A_51jce   A     MSESELENOMETHIONINE L - 10
1jce_A_51jce   A     MSESELENOMETHIONINE G - 11
1jce_A_51jce   A     MSESELENOMETHIONINE T - 12
1jce_A_51jce   A     MSESELENOMETHIONINE A - 13
1jce_A_51jce   A     MSESELENOMETHIONINE T - 15
1jce_A_51jce   A     MSESELENOMETHIONINE F - 18
1jni_A_511jni   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 51
1jni_A_511jni   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 56
1jp4_A_381jp4   A     PO4PHOSPHATE ION K - 40
1jp4_A_381jp4   A     MGMAGNESIUM ION K - 40
1jp4_A_381jp4   A     AMPADENOSINE MONOPHOSPHATE T - 41
1jp4_A_381jp4   A     AMPADENOSINE MONOPHOSPHATE T - 44
1jp4_A_381jp4   A     PO4PHOSPHATE ION D - 45
1jp4_A_381jp4   A     MGMAGNESIUM ION D - 45
1jp4_A_381jp4   A     AMPADENOSINE MONOPHOSPHATE D - 45
1jp4_A_381jp4   A     PO4PHOSPHATE ION L - 46
1jp4_A_381jp4   A     MGMAGNESIUM ION L - 46
1k55_A_1931k55   A     EDO1,2-ETHANEDIOL E - 195
1k55_A_1931k55   A     EDO1,2-ETHANEDIOL A - 197
1k55_A_1931k55   A     EDO1,2-ETHANEDIOL P - 198
1k55_A_1931k55   A     EDO1,2-ETHANEDIOL E - 199
1k55_A_1931k55   A     EDO1,2-ETHANEDIOL Y - 200
1k55_A_1931k55   A     EDO1,2-ETHANEDIOL L - 201
1k55_A_1931k55   A     EDO1,2-ETHANEDIOL V - 202
1k55_A_1931k55   A     KCXLYSINE NZ-CARBOXYLIC ACID K - 205
1k55_A_1931k55   A     SULSULFATE ANION K - 205
1k55_A_1931k55   A     SULSULFATE ANION T - 206
1k55_A_1931k55   A     SULSULFATE ANION G - 207
1k55_A_1931k55   A     SULSULFATE ANION F - 208
1luc_A_1431luc   A     EDO1,2-ETHANEDIOL I - 151
1luc_A_1431luc   A     EDO1,2-ETHANEDIOL K - 152
1luc_A_1431luc   A     EDO1,2-ETHANEDIOL F - 153
1luc_A_1431luc   A     EDO1,2-ETHANEDIOL P - 154
1luc_A_1431luc   A     EDO1,2-ETHANEDIOL K - 155
1luc_A_1431luc   A     EDO1,2-ETHANEDIOL I - 156
1nc7_A_931nc7   A     MSESELENOMETHIONINE L - 93
1nc7_A_931nc7   A     MSESELENOMETHIONINE S - 94
1nc7_A_931nc7   A     EDO1,2-ETHANEDIOL S - 94
1nc7_A_931nc7   A     MSESELENOMETHIONINE R - 95
1nc7_A_931nc7   A     EDO1,2-ETHANEDIOL R - 95
1nc7_A_931nc7   A     MSESELENOMETHIONINE L - 96
1nc7_A_931nc7   A     EDO1,2-ETHANEDIOL L - 96
1nc7_A_931nc7   A     FMTFORMIC ACID N - 101
1nc7_A_931nc7   A     FMTFORMIC ACID H - 102
1nc7_A_931nc7   A     MGMAGNESIUM ION Y - 103
1nc7_A_931nc7   A     FMTFORMIC ACID Y - 103
1nc7_A_931nc7   A     MSESELENOMETHIONINE T - 104
1nc7_A_931nc7   A     MGMAGNESIUM ION T - 104
1ou8_A_601ou8   A     MGMAGNESIUM ION G - 60
1ou8_A_601ou8   A     MGMAGNESIUM ION N - 61
1pl3_A_1091pl3   A     NAGN-ACETYL-D-GLUCOSAMINE T - 109
1pl3_A_1091pl3   A     NAGN-ACETYL-D-GLUCOSAMINE N - 111
1pl3_A_1091pl3   A     NAGN-ACETYL-D-GLUCOSAMINE S - 112
1pl3_A_1091pl3   A     NAGN-ACETYL-D-GLUCOSAMINE T - 113
1pl3_A_1091pl3   A     NAGN-ACETYL-D-GLUCOSAMINE H - 114
1pl3_A_1091pl3   A     NAGN-ACETYL-D-GLUCOSAMINE K - 116
1pp7_U_1101pp7   U     ZNZINC ION V - 115
1qft_A_1071qft   A     HSMHISTAMINE F - 108
1qft_A_1071qft   A     HSMHISTAMINE D - 110
1qft_A_1071qft   A     HSMHISTAMINE D - 120
1qft_A_1071qft   A     HSMHISTAMINE I - 122
1qft_A_1071qft   A     HSMHISTAMINE V - 124
1qwr_A_2371qwr   A     MSESELENOMETHIONINE I - 237
1qwr_A_2371qwr   A     MSESELENOMETHIONINE I - 239
1qwr_A_2371qwr   A     MSESELENOMETHIONINE W - 253
1qwr_A_2371qwr   A     MSESELENOMETHIONINE I - 255
1qwr_A_2371qwr   A     MSESELENOMETHIONINE A - 259
1r6t_A_841r6t   A     TYMTRYPTOPHANYL-5'AMP P - 87
1ux6_A_10041ux6   A     CACALCIUM ION S - 1013
1ux6_A_10041ux6   A     CACALCIUM ION K - 1023
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gpj_A_411gpj   A ACTRECOGNITION AND ACTIVE SITE, HERE OCCUPIED BY THE INHIBITOR GLUTAMYCINT - 47
1gpj_A_411gpj   A ACTRECOGNITION AND ACTIVE SITE, HERE OCCUPIED BY THE INHIBITOR GLUTAMYCINS - 48
1gpj_A_411gpj   A AC2GLU BINDING SITE FOR CHAIN AN - 49
1gpj_A_411gpj   A ACTRECOGNITION AND ACTIVE SITE, HERE OCCUPIED BY THE INHIBITOR GLUTAMYCINR - 50
1gpj_A_411gpj   A ACTRECOGNITION AND ACTIVE SITE, HERE OCCUPIED BY THE INHIBITOR GLUTAMYCINE - 52

Clusters included in this Subclass
CLUSTER: HA.1.20
CLUSTER: HA.1.58
CLUSTER: HA.1.64
CLUSTER: HA.2.132
CLUSTER: HA.2.135
CLUSTER: HA.2.29
CLUSTER: HA.2.96
CLUSTER: HA.3.172
CLUSTER: HA.3.27
CLUSTER: HA.3.70
CLUSTER: HA.4.37
CLUSTER: HA.4.50
CLUSTER: HA.4.99
CLUSTER: HA.5.46