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PDB code:

Information on SUBCLASS 2.2.5

Subclass Accession number: 475 Subclass: 2.2.5 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates:

Number of loops: 31 Average sequence ID (%) : 9.6 +/- 12.5 Average RMSD (Å) : 0.468 +/- 0.154 Consensus geometry d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 225-270

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1acf_*_65	1acf	-	70	79	LRADDRSIYG	EEESSSEEEE	abbbaabbbb
1bj7_*_85	1bj7	-	91	100	IHVSENMLVT	EEE-SSEEEE	abbbaabbbb
1bpy_A_224	1bpy	A	228	237	LSKGETKFMG	EEE-SSEEEE	abbbaabbbb
1bup_A_7	1bup	A	9	18	IDLGSTYSCV	EEE-SSEEEE	bxxxaabbbb
1ecs_A_27	1ecs	A	29	38	VFRDAGWMIL	EEE-SSEEEE	abbbaabbbb
1f1s_A_913	1f1s	A	916	925	LENSSKQQVI	EEE-SSEEEE	abbbaabbbb
1f1u_A_42	1f1u	A	44	53	TEEDENTIYL	EEE-SSEEEE	abbbaabbbb
1fy7_A_226	1fy7	A	228	237	IYRDDYVSFF	EEE-SSEEEE	abbbaabbbb
1guq_A_212	1guq	A	213	222	VVETEHWLAV	EEE-SSEEEE	abbbaabbbb
1gx3_A_209	1gx3	A	211	220	AVVTDDARYN	EEE-SSEEEE	bbbxaabbbb
1hr6_B_98	1hr6	B	101	110	AYTSRENTVY	EEE-SSEEEE	bbbbaabbbb
1j1y_A_79	1j1y	A	87	96	VNLSRRTATY	EEE-SSEEEE	abbbaabbbb
1jmx_A_319	1jmx	A	325	334	LEQTPTLVRL	EEE-SSEEEE	abbbaabbxb
1k9a_A_195	1k9a	A	201	210	IGKGEFGDVM	EEE-SSEEEE	abbxaabbbb
1kpf_*_31	1kpf	-	32	41	IFEDDRCLAF	EEE-SSEEEE	abbbaabbbb
1kyf_A_714	1kyf	A	716	725	LFENQLLQIG	EEE-SSEEEE	abbbaabbbb
1m93_B_278	1m93	B	284	293	IDVNEEYTEA	EEE-SSEEEE	bbbbaabbbb
1mp2_A_8	1mp2	A	14	23	LHTGAIFALR	EEE-SSEEEE	abbbaabbbb
1nbw_A_3	1nbw	A	7	16	IDIGNATTEV	EEE-SSEEEE	bbxxaabbbb
1obd_A_14	1obd	A	15	24	VARGKVRDIY	EEE-SSEEEE	abbxaabbbb
1ooy_A_429	1ooy	A	429	438	RIITEKAVFD	EEE-SSEEEE	bbbbaabbbx
1orv_A_404	1orv	A	408	417	EALTSDYLYY	EEE-SSEEEE	abbbaabbbb
1pam_A_541	1pam	A	542	551	VAWEDTQIQV	EEE-SSEEEE	abbbaabbbb
1prz_A_86	1prz	A	87	96	VYEDEDIIVI	EEE-SSEEEE	abbbaabbbb
1psu_A_95	1psu	A	101	110	RHQGKQTGVY	EEE-SSEEEE	abbxaabbbb
1q4t_A_108	1q4t	A	116	125	IHAGSTTWFW	EEE-SSEEEE	abbxaabbbb
1q4t_A_37	1q4t	A	39	48	DEMTPERATA	EEE-SSEEEE	axbbaabbbb
1qft_A_107	1qft	A	113	122	AYSDDNCDVI	EEEETTEEEE	abbbaabbbb
1qho_A_409	1qho	A	413	422	RWINNDVYIY	EEE-SSEEEE	abbbaabbbb
1qho_A_538	1qho	A	539	548	KSWTSNRIEV	EEE-SSEEEE	abbbaabbbb
1s16_A_1233	1s16	A	1241	1250	NFAGDTEAVD	EEE-SSEEEE	bbbbaabbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1bpy_A_224	1bpy	A	DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE	K - 234
1bpy_A_224	1bpy	A	DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE	M - 236
1bup_A_7	1bup	A	MGMAGNESIUM ION	D - 10
1bup_A_7	1bup	A	ADPADENOSINE-5'-DIPHOSPHATE	D - 10
1bup_A_7	1bup	A	PIHYDROGENPHOSPHATE ION	D - 10
1bup_A_7	1bup	A	ADPADENOSINE-5'-DIPHOSPHATE	L - 11
1bup_A_7	1bup	A	PIHYDROGENPHOSPHATE ION	L - 11
1bup_A_7	1bup	A	MGMAGNESIUM ION	G - 12
1bup_A_7	1bup	A	ADPADENOSINE-5'-DIPHOSPHATE	G - 12
1bup_A_7	1bup	A	PIHYDROGENPHOSPHATE ION	G - 12
1bup_A_7	1bup	A	MGMAGNESIUM ION	S - 13
1bup_A_7	1bup	A	ADPADENOSINE-5'-DIPHOSPHATE	S - 13
1bup_A_7	1bup	A	PIHYDROGENPHOSPHATE ION	S - 13
1bup_A_7	1bup	A	ADPADENOSINE-5'-DIPHOSPHATE	T - 14
1bup_A_7	1bup	A	PIHYDROGENPHOSPHATE ION	T - 14
1bup_A_7	1bup	A	MGMAGNESIUM ION	Y - 15
1bup_A_7	1bup	A	ADPADENOSINE-5'-DIPHOSPHATE	Y - 15
1bup_A_7	1bup	A	PIHYDROGENPHOSPHATE ION	Y - 15
1bup_A_7	1bup	A	ADPADENOSINE-5'-DIPHOSPHATE	S - 16
1ecs_A_27	1ecs	A	PG4TETRAETHYLENE GLYCOL	V - 29
1ecs_A_27	1ecs	A	PG4TETRAETHYLENE GLYCOL	F - 30
1ecs_A_27	1ecs	A	PG4TETRAETHYLENE GLYCOL	W - 35
1ecs_A_27	1ecs	A	PG4TETRAETHYLENE GLYCOL	I - 37
1ecs_A_27	1ecs	A	PG4TETRAETHYLENE GLYCOL	Q - 39
1kpf_*_31	1kpf	*	AMPADENOSINE MONOPHOSPHATE	F - 41
1kpf_*_31	1kpf	*	AMPADENOSINE MONOPHOSPHATE	H - 42
1obd_A_14	1obd	A	ATPADENOSINE-5'-TRIPHOSPHATE	A - 16
1obd_A_14	1obd	A	ATPADENOSINE-5'-TRIPHOSPHATE	R - 17
1obd_A_14	1obd	A	ATPADENOSINE-5'-TRIPHOSPHATE	G - 18
1obd_A_14	1obd	A	ATPADENOSINE-5'-TRIPHOSPHATE	K - 19
1obd_A_14	1obd	A	ATPADENOSINE-5'-TRIPHOSPHATE	V - 20
1obd_A_14	1obd	A	ATPADENOSINE-5'-TRIPHOSPHATE	R - 21
1obd_A_14	1obd	A	MGMAGNESIUM ION	R - 21
1obd_A_14	1obd	A	ATPADENOSINE-5'-TRIPHOSPHATE	D - 22
1obd_A_14	1obd	A	ATPADENOSINE-5'-TRIPHOSPHATE	I - 23
1orv_A_404	1orv	A	SULSULFATE ANION	I - 405
1orv_A_404	1orv	A	SULSULFATE ANION	G - 406
1orv_A_404	1orv	A	SULSULFATE ANION	I - 407
1orv_A_404	1orv	A	SULSULFATE ANION	E - 408
1prz_A_86	1prz	A	MSESELENOMETHIONINE	Y - 88
1prz_A_86	1prz	A	MSESELENOMETHIONINE	D - 90
1prz_A_86	1prz	A	MSESELENOMETHIONINE	I - 93
1prz_A_86	1prz	A	MSESELENOMETHIONINE	I - 94
1prz_A_86	1prz	A	MSESELENOMETHIONINE	V - 95
1prz_A_86	1prz	A	MSESELENOMETHIONINE	I - 96
1psu_A_95	1psu	A	MSESELENOMETHIONINE	T - 95
1qft_A_107	1qft	A	HSMHISTAMINE	F - 108
1qft_A_107	1qft	A	HSMHISTAMINE	D - 110
1qft_A_107	1qft	A	HSMHISTAMINE	D - 120
1qft_A_107	1qft	A	HSMHISTAMINE	I - 122
1qft_A_107	1qft	A	HSMHISTAMINE	V - 124
1qho_A_409	1qho	A	MALMALTOSE	Q - 412
1qho_A_409	1qho	A	MALMALTOSE	R - 413
1qho_A_409	1qho	A	MALMALTOSE	W - 414
1qho_A_409	1qho	A	MALMALTOSE	I - 415
1qho_A_409	1qho	A	MALMALTOSE	N - 416

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1obd_A_14	1obd	A	AC2ATP BINDING SITE FOR CHAIN A	G - 18
1obd_A_14	1obd	A	AC2ATP BINDING SITE FOR CHAIN A	K - 19
1obd_A_14	1obd	A	AC2ATP BINDING SITE FOR CHAIN A	R - 21

Clusters included in this Subclass

CLUSTER: HA.2.13

CLUSTER: HA.4.20

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