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Information on SUBCLASS 4.4.2
Subclass Accession number: 4784
Subclass: 4.4.2 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 10

Average sequence ID (%) : 19.2 +/- 19.5
Average RMSD (Å) : 0.730 +/- 0.340

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: XXpXXcXX
(φψ)-conformation: aalappaa
Pattern: x[ilmvw][filvy][aens][aekqs][DEGKNR][ekl]x[dhn][dkp]x[afy][ILVWY]x[AEGNRS][CHRSY]
Conservation:-1.177-0.2450.1270.231-0.0750.228-0.939-0.7052.4420.382-1.9860.4111.068-0.5770.3130.504
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aa6_*_2231aa6   -233248VIIEENLYDKAFVASRHHHHTT-S-HHHHHHHaaaaalaxxaaaaaaa
1dms_*_2431dms   -253268TLVAEDLYDKDFIANYHHHHTT-S-HHHHHHHaaaaalaxxaaaaaaa
1eu1_A_2431eu1   A253268TLYSEDLHDKDFLENCHHHHTT-S-HHHHHHHaaaaalaxxaaaaaaa
1g8k_A_3061g8k   A316331YVVEQGWIDKPFIEAHHHHHHT-S-HHHHHHHaaaaavabbaaaaaaa
1h0h_A_2411h0h   A251266YILEKELYFKDYVVNYHHHHTT-S-HHHHHHHaaaaalaxxaaaaaaa
1n3l_A_2921n3l   A297312KDFAAEVVHPGDLKNSHHHHTT-S-HHHHHHHaaaaavabxaaaaaaa
1qsa_A_1381qsa   A145160VWRASGKQDPLAYLERHHHHTT-S-HHHHHHHaaaaavaxxaaaaaaa
1thf_D_2251thf   D225240SVFHFREIDVRELKEYHHHHTT-S-HHHHHHHaaaaalabxaaaaaaa
1tmo_*_2491tmo   -259274EMISKKLYDDKFIQGYHHHHTT-S-HHHHHHHaaaaalaxxaaaaaaa
2nap_A_2252nap   A235250VIINEELDNPRFWQRYHHHHTT-S-HHHHHHHaaaaalaxbaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aa6_*_2231aa6   *     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE N - 223
1dms_*_2431dms   *     PGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE D - 243
1eu1_A_2431eu1   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE D - 243
1g8k_A_3061g8k   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE D - 306
1h0h_A_2411h0h   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE D - 241
1h0h_A_2411h0h   A     CACALCIUM ION F - 259
1n3l_A_2921n3l   A     GOLGLYCEROL Y - 292
1qsa_A_1381qsa   A     GOLGLYCEROL L - 155
1qsa_A_1381qsa   A     GOLGLYCEROL L - 158
1thf_D_2251thf   D     PO4PHOSPHATE ION S - 225
1thf_D_2251thf   D     PO4PHOSPHATE ION V - 226
1tmo_*_2491tmo   *     2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER D - 249
2nap_A_2252nap   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE D - 225

Clusters included in this Subclass
CLUSTER: HH.5.41