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Information on SUBCLASS 4.5.1
Subclass Accession number: 4787
Subclass: 4.5.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 20

Average sequence ID (%) : 13.9 +/- 15.8
Average RMSD (Å) : 0.885 +/- 0.291

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXGXppXX
(φψ)-conformation: aagpapaa
Pattern: xxx[ailmwy]xxx[DEGKQ]x[adknrst][ADGKNRST]x[adegknqst]x[fhil]x
Conservation:-0.416-0.489-1.0430.064-0.498-0.237-0.7493.143-0.2780.6611.017-0.753-0.145-0.3710.533-0.439
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b0x_A_9481b0x   A948963QDDLARIGITAITHQNHHHHHHHT---HHHHHaaaaaaagxaxaaaaa
1bkp_A_651bkp   A7287LLWIWQLKSNDVNDLNHHHHHTS---BHHHHHaaaaaaalbaxaaaaa
1csc_*_2091csc   -211226HNFTNMLGYTDAQFTEHHHHHHHT---HHHHHaaaaaaagxapaaaaa
1csh_*_2091csh   -211226HNFTNMLGYTDPQFTEHHHHHHHT---HHHHHaaaaaaavbapaaaaa
1e5k_A_1421e5k   A146161LLEYLQAGERRVMVFMHHHHHHTT---HHHHHaaaaaaavxaxaaaaa
1f28_A_591f28   A6580ELLWFIRGETDSLKLRHHHHHHTT--BHHHHHaaaaaaavxaxaaaaa
1hvy_A_811hvy   A87102ELLWFIKGSTNAKELSHHHHHHTT--BHHHHHaaaaaaavxabaaaaa
1hyp_*_371hyp   -4560CIQLRALGILNLNRNLHHHHHHHT-S-HHHHHaaaaaaavxaxaaaaa
1iho_A_2031iho   A211226IADKLQAGERDLDEIIHHHHHHTT---HHHHHaaaaaaavpaxaaaaa
1is2_A_561is2   A7186VKKMREYGISDPEEIMHHHHHHHT--SHHHHHaaaaaaavxapaaaaa
1izm_A_211izm   A2843LSGLLCGGLKDQSWLPHHHHHHTT--STTHHHaaaaaaavxabaaaaa
1j3k_C_3771j3k   C382397ELLWFIRGETNGNTLLHHHHHHTT--BHHHHHaaaaaaavxaxaaaaa
1k6w_A_3271k6w   A332347HMGLHVCQLMGYGQINHHHHHHTT--SHHHHHaaaaaaalxaxaaaaa
1kcx_A_2021kcx   A209224QKRILEMGITGPEGHAHHHHHHTT--STHHHHaaaaaaavxaxaaaaa
1kl9_A_911kl9   A112127RHVAEVLEYTKDEQLEHHHHHHTT--SHHHHHaaaaaaalxabaaaaa
1p35_A_1111p35   A116131AKILKSHDYTDKKSIEHHHHHHTT--SHHHHHaaaaaaavxaxaaaaa
1qgi_A_1491qgi   A153168VEQARQRGFTSAVTIGHHHHHHTT---HHHHHaaaaaaavbaxaaaaa
1qzz_A_411qzz   A4156LVDHLLAGADTLAGLAHHHHHHTT--SHHHHHaaaaaaagxNbaaaaa
1r9l_A_2621r9l   A268283QNAIMHDGKASEGDIQHHHHHHHT--SHHHHHaaaaaaaNbaxaaaaa
1uby_*_2211uby   -225240AAAMYMVGIDSKEEHEHHHHHHHT---HHHHHaaaaaaagxapaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1f28_A_591f28   A     F89S)-2-(5(((1,2-DIHYDRO-3-METHYL-1-OXOBENZO(F)QUINAZOLIN -9-YL)METHYL)AMINO)1-OXO-2-ISOINDOLINYL)GLUTARIC ACID G - 61
1f28_A_591f28   A     F89S)-2-(5(((1,2-DIHYDRO-3-METHYL-1-OXOBENZO(F)QUINAZOLIN -9-YL)METHYL)AMINO)1-OXO-2-ISOINDOLINYL)GLUTARIC ACID V - 62
1f28_A_591f28   A     UMP2'-DEOXYURIDINE 5'-MONOPHOSPHATE E - 65
1f28_A_591f28   A     F89S)-2-(5(((1,2-DIHYDRO-3-METHYL-1-OXOBENZO(F)QUINAZOLIN -9-YL)METHYL)AMINO)1-OXO-2-ISOINDOLINYL)GLUTARIC ACID E - 65
1hvy_A_811hvy   A     D16TOMUDEX E - 87
1hvy_A_811hvy   A     UMP2'-DEOXYURIDINE 5'-MONOPHOSPHATE E - 87
1hvy_A_811hvy   A     D16TOMUDEX F - 91
1izm_A_211izm   A     MSESELENOMETHIONINE A - 21
1izm_A_211izm   A     MSESELENOMETHIONINE L - 24
1izm_A_211izm   A     MSESELENOMETHIONINE C - 33
1kl9_A_911kl9   A     MSESELENOMETHIONINE A - 94
1kl9_A_911kl9   A     MSESELENOMETHIONINE C - 97
1kl9_A_911kl9   A     MSESELENOMETHIONINE E - 98
1kl9_A_911kl9   A     MSESELENOMETHIONINE F - 101
1kl9_A_911kl9   A     ZNZINC ION H - 113
1kl9_A_911kl9   A     ZNZINC ION E - 116
1qgi_A_1491qgi   A     GCSD-GLUCOSAMINE L - 175
1qgi_A_1491qgi   A     GCSD-GLUCOSAMINE N - 176
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e5k_A_1421e5k   A CI1CITRIC ACID BINDING SITE FOR RESIDUE 302R - 155
1e5k_A_1421e5k   A CI1CITRIC ACID BINDING SITE FOR RESIDUE 302R - 156
1e5k_A_1421e5k   A CI1CITRIC ACID BINDING SITE FOR RESIDUE 302M - 158

Clusters included in this Subclass
CLUSTER: HH.5.15
CLUSTER: HH.6.17