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Information on SUBCLASS 4.5.2
Subclass Accession number: 4788
Subclass: 4.5.2 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 15.0 +/- 20.2
Average RMSD (Å) : 0.975 +/- 0.337

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: XXGXppXX
(φψ)-conformation: aagpapaa
Pattern: x[dnqty]x[fkltv][enrtw]xx[EG]x[dntv][ADENR]xxx[ailt]x[ackl][ilmt]x
Conservation:-0.978-0.473-0.608-0.466-0.449-0.1140.2213.6410.0780.5250.821-0.345-0.530-1.0250.143-0.045-0.4400.238-0.194
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b0x_A_9481b0x   A948966QDDLARIGITAITHQNKILHHHHHHHT---HHHHHHHHaaaaaaagxaxaaaaaaaa
1csc_*_2091csc   -211229HNFTNMLGYTDAQFTELMRHHHHHHHT---HHHHHHHHaaaaaaagxapaaaaaaaa
1csh_*_2091csh   -211229HNFTNMLGYTDPQFTELMRHHHHHHHT---HHHHHHHHaaaaaaavbapaaaaaaaa
1gwu_A_1451gwu   A149167KDSFRNVGLNRSSDLVALSHHHHHHHT---HHHHHHHHaaaaaaagbaxaaaaaaaa
1jb0_A_1431jb0   A144162FQLWRASGITNEFQLYCTAHHHHHHHT--SHHHHHHHHaaaaaaavxabaaaaaaaa
1jgt_A_3091jgt   A310328PYAVWASESVDPDIIEYLLHHHHHHH----HHHHHHHHaaaaaaalbaxaaaaaaaa
1nbw_A_4411nbw   A446464LLIKTELGLEDLSLAEAIKHHHHHHHT-S-HHHHHHHHaaaaaaavxabaaaaaaaa
1usg_A_2751usg   A288306ATALERTGSDEPLALVKDLHHHHHHH----HHHHHHHHaaaaaaavxaxaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gwu_A_1451gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 148
1gwu_A_1451gwu   A     CACALCIUM ION L - 148
1gwu_A_1451gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 151
1gwu_A_1451gwu   A     CACALCIUM ION S - 151
1gwu_A_1451gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 152
1gwu_A_1451gwu   A     CACALCIUM ION F - 152
1gwu_A_1451gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 163
1gwu_A_1451gwu   A     CACALCIUM ION L - 163
1gwu_A_1451gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 166
1gwu_A_1451gwu   A     CACALCIUM ION L - 166
1gwu_A_1451gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 167
1gwu_A_1451gwu   A     CACALCIUM ION S - 167
1jb0_A_1431jb0   A     CACALCIUM ION L - 143
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A L - 143
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A Q - 145
1jb0_A_1431jb0   A     CACALCIUM ION L - 146
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A L - 146
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A W - 147
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A A - 149
1jb0_A_1431jb0   A     CACALCIUM ION S - 150
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A S - 150
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A G - 151
1jb0_A_1431jb0   A     CACALCIUM ION I - 152
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A I - 152
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A T - 153
1jb0_A_1431jb0   A     CACALCIUM ION F - 156
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A F - 156
1jb0_A_1431jb0   A     CACALCIUM ION Q - 157
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A Q - 157
1jb0_A_1431jb0   A     CACALCIUM ION C - 160
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A C - 160
1jb0_A_1431jb0   A     BCRBETA-CAROTENE C - 160
1jb0_A_1431jb0   A     CACALCIUM ION T - 161
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A T - 161
1jb0_A_1431jb0   A     BCRBETA-CAROTENE T - 161
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A A - 162
1jb0_A_1431jb0   A     BCRBETA-CAROTENE A - 162
1jb0_A_1431jb0   A     BCRBETA-CAROTENE I - 163
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A G - 164
1jb0_A_1431jb0   A     BCRBETA-CAROTENE G - 164
1jb0_A_1431jb0   A     BCRBETA-CAROTENE G - 165
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A L - 166
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A M - 168
1jb0_A_1431jb0   A     BCRBETA-CAROTENE M - 168
1jb0_A_1431jb0   A     CACALCIUM ION L - 171
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A L - 171
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A M - 172
1jb0_A_1431jb0   A     CACALCIUM ION L - 173
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A L - 173
1jb0_A_1431jb0   A     CACALCIUM ION F - 174
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A F - 174
1jb0_A_1431jb0   A     CACALCIUM ION A - 175
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A A - 175
1jb0_A_1431jb0   A     CACALCIUM ION G - 176
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A G - 176
1jb0_A_1431jb0   A     CACALCIUM ION W - 177
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A W - 177
1jb0_A_1431jb0   A     CACALCIUM ION F - 178
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A F - 178
1jb0_A_1431jb0   A     CACALCIUM ION H - 179
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A H - 179
1jb0_A_1431jb0   A     CACALCIUM ION Y - 180
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A Y - 180
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A H - 181
1jgt_A_3091jgt   A     CMAN2-(CARBOXYETHYL)-L-ARGININE I - 323
1jgt_A_3091jgt   A     CMAN2-(CARBOXYETHYL)-L-ARGININE Y - 326
1jgt_A_3091jgt   A     CMAN2-(CARBOXYETHYL)-L-ARGININE L - 327
1jgt_A_3091jgt   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER P - 329
1jgt_A_3091jgt   A     CMAN2-(CARBOXYETHYL)-L-ARGININE P - 329
1jgt_A_3091jgt   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER L - 330
1jgt_A_3091jgt   A     CMAN2-(CARBOXYETHYL)-L-ARGININE L - 330
1jgt_A_3091jgt   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER L - 333
1jgt_A_3091jgt   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER Y - 334

Clusters included in this Subclass
CLUSTER: HH.3.82