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Information on SUBCLASS 4.10.1
Subclass Accession number: 4806
Subclass: 4.10.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 12.2 +/- 12.6
Average RMSD (Å) : 1.000 +/- 0.370

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: XhXhXpXX
(φψ)-conformation: aalpabaa
Pattern: [ALMPTV]xx[agiklv]x[AEKR][alvy][EGR][flv][deprt][dst]x[DGNQRS]xx[ekl][aekrst]x[fikl]
Conservation:0.315-0.553-1.691-0.957-1.3231.3570.1712.0481.137-0.0881.203-1.2700.553-0.808-0.2620.275-0.095-0.5220.509
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1af7_*_471af7   -5573VRRLRALGLDDFGRYLSMLHHHHHHHT---HHHHHHHHaaaaaaavbabaaaaaaaa
1b4f_A_461b4f   A4664MEDILRVGVTLAGHQKKILHHHHHHTT---HHHHHHHHaaaaaaavxaxaaaaaaaa
1bl0_A_791bl0   A8098LYLAERYGFESQQTLTRTFHHHHHHTT-S-HHHHHHHHaaaaaaagxabaaaaaaaa
1jgt_A_3091jgt   A310328PYAVWASESVDPDIIEYLLHHHHHHH----HHHHHHHHaaaaaaalbaxaaaaaaaa
1jhf_A_281jhf   A2947AEIAQRLGFRSPNAAEEHLHHHHHHTT-SSHHHHHHHHaaaaaaavxabaaaaaaaa
1nbw_A_4411nbw   A446464LLIKTELGLEDLSLAEAIKHHHHHHHT-S-HHHHHHHHaaaaaaavxabaaaaaaaa
1qxo_A_1121qxo   A113131LVGGIKYRFDDLRNSLERSHHHHHHHT-SSTHHHHHHHaaaaaaalxabaaaaaaaa
1t7p_A_5051t7p   A507525TKNQIAAELPTRDNAKTFIHHHHHHHT-S-HHHHHHHHaaaaaaavbabaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1jgt_A_3091jgt   A     CMAN2-(CARBOXYETHYL)-L-ARGININE I - 323
1jgt_A_3091jgt   A     CMAN2-(CARBOXYETHYL)-L-ARGININE Y - 326
1jgt_A_3091jgt   A     CMAN2-(CARBOXYETHYL)-L-ARGININE L - 327
1jgt_A_3091jgt   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER P - 329
1jgt_A_3091jgt   A     CMAN2-(CARBOXYETHYL)-L-ARGININE P - 329
1jgt_A_3091jgt   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER L - 330
1jgt_A_3091jgt   A     CMAN2-(CARBOXYETHYL)-L-ARGININE L - 330
1jgt_A_3091jgt   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER L - 333
1jgt_A_3091jgt   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER Y - 334
1qxo_A_1121qxo   A     MSESELENOMETHIONINE D - 112
1qxo_A_1121qxo   A     EGLETHYLENE GLYCOL L - 113
1qxo_A_1121qxo   A     MSESELENOMETHIONINE V - 114
1qxo_A_1121qxo   A     EGLETHYLENE GLYCOL V - 114
1qxo_A_1121qxo   A     MSESELENOMETHIONINE G - 115
1qxo_A_1121qxo   A     EGLETHYLENE GLYCOL I - 117
1qxo_A_1121qxo   A     MSESELENOMETHIONINE K - 118
1qxo_A_1121qxo   A     MSESELENOMETHIONINE Y - 119
1qxo_A_1121qxo   A     NCOCOBALT HEXAMMINE ION Y - 119
1qxo_A_1121qxo   A     NCOCOBALT HEXAMMINE ION R - 120
1qxo_A_1121qxo   A     NCOCOBALT HEXAMMINE ION F - 121
1qxo_A_1121qxo   A     NCOCOBALT HEXAMMINE ION D - 122
1qxo_A_1121qxo   A     MSESELENOMETHIONINE R - 125
1qxo_A_1121qxo   A     MSESELENOMETHIONINE N - 126
1qxo_A_1121qxo   A     MSESELENOMETHIONINE S - 127
1qxo_A_1121qxo   A     EPS5-[(1-CARBOXYVINYL)OXY]-4-HYDROXY-3-(PHOSPHONOOXY) CYCLOHEX-1-ENE-1-CARBOXYLIC ACID L - 128
1qxo_A_1121qxo   A     MSESELENOMETHIONINE E - 129
1qxo_A_1121qxo   A     FMNFLAVIN MONONUCLEOTIDE S - 131
1qxo_A_1121qxo   A     EPS5-[(1-CARBOXYVINYL)OXY]-4-HYDROXY-3-(PHOSPHONOOXY) CYCLOHEX-1-ENE-1-CARBOXYLIC ACID S - 131
1t7p_A_5051t7p   A     DG32'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE I - 505
1t7p_A_5051t7p   A     DG32'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE H - 506
1t7p_A_5051t7p   A     DG32'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE R - 518
1t7p_A_5051t7p   A     2DA2',3'-DIDEOXYADENOSINE-5'-MONOPHOSPHATE K - 522
1t7p_A_5051t7p   A     DG32'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE K - 522
1t7p_A_5051t7p   A     MGMAGNESIUM ION K - 522
1t7p_A_5051t7p   A     DG32'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE T - 523
1t7p_A_5051t7p   A     DG32'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE Y - 526
1t7p_A_5051t7p   A     DG32'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE G - 527

Clusters included in this Subclass
CLUSTER: HH.4.100
CLUSTER: HH.5.79