Information on SUBCLASS 4.10.2 |
Subclass Accession number: 4807
Subclass: 4.10.2 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 6 Average sequence ID (%) : 15.0 +/- 23.7 Average RMSD (Å) : 0.983 +/- 0.293 Consensus geometry
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Consensus Sequence: | pXXppXXh |
(φψ)-conformation: | aalpabaa |
Pattern: | [an] | x | x | x | [EHQRS] | x | [alt] | x | x | x | [DGQS] | [dek] | [enty] | [aefk] | [ekp] | [AFLY] |
Conservation: | 0.898 | -1.808 | 0.171 | 0.988 | 1.085 | -0.514 | -0.037 | -0.797 | 0.456 | -1.519 | 0.950 | 0.951 | -0.882 | -1.246 | 1.064 | 0.240 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a1v_A_544 | 1a1v | A | 544 | 559 | AHFLSQTKQSGENFPY | HHHHHHHHHTT-SSHH | aaaaaaaaaavpabaa |
1cu1_A_544 | 1cu1 | A | 544 | 559 | AHFLSQTKQAGDNFPY | HHHHHHHHHH--S-HH | aaaaaaaaaavpabaa |
1dxy_*_120 | 1dxy | - | 120 | 135 | MGKVQAQLQAGDYEKA | HHHHHHHHHTT-HHHH | aaaaaaaaaavbaaaa |
1hk8_A_132 | 1hk8 | A | 145 | 160 | AKHIEDAEKWQIADAL | HHHHHHHHHTT-SSHH | aaaaaaaaaalxaxaa |
1ukf_A_126 | 1ukf | A | 139 | 154 | NDALRAALSNDDEAPF | HHHHHHHHHTT-SSHH | aaaaaaaaaalxabaa |
2hgs_A_160 | 2hgs | A | 161 | 176 | AVHRHVLSVLSKTKEA | HHHHHHHHHTT-HHHH | aaaaaaaaaavbaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1a1v_A_544 | 1a1v | A | CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE | L - 547 |
1a1v_A_544 | 1a1v | A | CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE | K - 551 |
1a1v_A_544 | 1a1v | A | CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE | Y - 559 |
1hk8_A_132 | 1hk8 | A | DGT2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE | K - 146 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1hk8_A_132 | 1hk8 | A | DG1DGT BINDING SITE FOR CHAIN A | K - 146 |
1hk8_A_132 | 1hk8 | A | DG1DGT BINDING SITE FOR CHAIN A | K - 169 |
Clusters included in this Subclass |
CLUSTER: HH.4.114 |
CLUSTER: HH.5.148 |