ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.11.1

Subclass Accession number: 4809
Subclass: 4.11.1

PSSM

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 8

Average sequence ID (%) : 13.4 +/- 19.1
Average RMSD (Å) : 1.050 +/- 0.239

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	XXXXhpXp
(φψ)-conformation:	aabpbpaa

Pattern:	x	[QRSTW]	x	x	x	[aeqrt]	x	[dektw]	[flmv]	[CDNST]	[ekpqt]	[dehkt]	[ADEQR]	[LW]	x	[aekq]
Conservation:	-1.235	0.268	-1.155	0.103	-1.132	-0.240	-1.363	-0.505	0.942	0.706	-0.106	-0.022	1.053	2.366	-0.313	0.634

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a5t_*_169	1a5t	-	174	189	TWLSREVTMSQDALLA	HHHHHH----HHHHHH	aaaaaabbbxaaaaaa
1ef1_A_155	1ef1	A	155	170	QRVLEQHKLNKDQWEE	HHHHHHS---HHHHHH	aaaaaabxbxaaaaaa
1i27_A_456	1i27	A	460	475	RRYLTRKPMTTKDLLK	HHHHHHS-B-HHHHHH	aaaaaabwbxaaaaaa
1i6l_A_41	1i6l	A	41	56	DQHAITVWQDPHELRQ	HHHHTTS---HHHHHH	aaaaaabpbxaaaaaa
1j19_A_155	1j19	A	155	170	QRVLEQHKLTKEQWEE	HHHHHHS---HHHHHH	aaaaaabxbxaaaaaa
1kiy_A_50	1kiy	A	50	65	PRQQQLLKVDPKRLQA	HHHHHH----HHHHHH	aaaaaaxxbxaaaaaa
1m44_A_18	1m44	A	28	43	VTGAFAGDFTETDWEH	HHHH-SS---HHHHHH	aaaaxaxxxxaaaaaa
1smt_A_46	1smt	A	52	67	LSLLARSELCVGDLAQ	HHHHTT--B-HHHHHH	aaaaaabxbxaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1i27_A_456	1i27	A	ZNZINC ION	P - 467
1i27_A_456	1i27	A	ZNZINC ION	M - 468
1i27_A_456	1i27	A	ZNZINC ION	T - 469
1i27_A_456	1i27	A	ZNZINC ION	D - 472
1i6l_A_41	1i6l	A	MSESELENOMETHIONINE	H - 43
1i6l_A_41	1i6l	A	TYMTRYPTOPHANYL-5'AMP	H - 43
1i6l_A_41	1i6l	A	GOLGLYCEROL	P - 51
1i6l_A_41	1i6l	A	GOLGLYCEROL	H - 52
1i6l_A_41	1i6l	A	GOLGLYCEROL	R - 55
1i6l_A_41	1i6l	A	MSESELENOMETHIONINE	Q - 56
1i6l_A_41	1i6l	A	GOLGLYCEROL	Q - 56
1i6l_A_41	1i6l	A	GOLGLYCEROL	N - 57
1i6l_A_41	1i6l	A	MSESELENOMETHIONINE	R - 59
1i6l_A_41	1i6l	A	GOLGLYCEROL	R - 59
1i6l_A_41	1i6l	A	MSESELENOMETHIONINE	R - 60
1i6l_A_41	1i6l	A	GOLGLYCEROL	R - 60
1i6l_A_41	1i6l	A	GOLGLYCEROL	L - 61
1i6l_A_41	1i6l	A	MSESELENOMETHIONINE	A - 63
1i6l_A_41	1i6l	A	GOLGLYCEROL	L - 64
1kiy_A_50	1kiy	A	EDO1,2-ETHANEDIOL	L - 55
1kiy_A_50	1kiy	A	EDO1,2-ETHANEDIOL	L - 56
1kiy_A_50	1kiy	A	EDO1,2-ETHANEDIOL	K - 57
1kiy_A_50	1kiy	A	EDO1,2-ETHANEDIOL	V - 58
1kiy_A_50	1kiy	A	EDO1,2-ETHANEDIOL	T - 69
1kiy_A_50	1kiy	A	EDO1,2-ETHANEDIOL	I - 70
1kiy_A_50	1kiy	A	EDO1,2-ETHANEDIOL	M - 73

Clusters included in this Subclass

CLUSTER: HH.3.134

CLUSTER: HH.5.89