Information on SUBCLASS 4.47.1 |
Subclass Accession number: 4858
Subclass: 4.47.1 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 17.6 +/- 15.4 Average RMSD (Å) : 0.800 +/- 0.200 Consensus geometry
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Consensus Sequence: | XXXpGXhh |
(φψ)-conformation: | aapplpaa |
Pattern: | x | x | [EQW] | x | [GQ] | [AT] | [ST] | [G] | [GS] | [AV] | [AGL] | [EST] | [QRT] | [AL] | x | x | [DGN] |
Conservation: | -0.935 | -1.019 | -0.176 | -0.260 | 0.052 | 0.515 | 0.863 | 3.113 | 0.858 | 0.201 | -1.104 | -0.260 | -0.345 | -0.130 | -0.851 | -0.598 | 0.077 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1he1_A_181 | 1he1 | A | 181 | 197 | LQQWGTTGGAASQLVLD | HHHHT-SSSHHHHHHHH | aaaaabbvbaaaaaaaa |
1nm8_A_39 | 1nm8 | A | 49 | 65 | VDEFQASGGVGERLQKG | HHHHHSTTSHHHHHHHH | aaaaappvxaaaaaaaa |
1tca_*_152 | 1tca | - | 153 | 169 | SVWQQTTGSALTTALRN | HHHHTBTT-HHHHHHHH | aaaaaxpvxaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1he1_A_181 | 1he1 | A | GDPGUANOSINE-5'-DIPHOSPHATE | T - 186 |
1he1_A_181 | 1he1 | A | GDPGUANOSINE-5'-DIPHOSPHATE | T - 187 |
1he1_A_181 | 1he1 | A | GDPGUANOSINE-5'-DIPHOSPHATE | G - 188 |
1he1_A_181 | 1he1 | A | GDPGUANOSINE-5'-DIPHOSPHATE | G - 189 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1he1_A_181 | 1he1 | A | AC1GDP BINDING SITE FOR CHAIN C | T - 186 |
1he1_A_181 | 1he1 | A | AC1GDP BINDING SITE FOR CHAIN C | T - 187 |
1he1_A_181 | 1he1 | A | AC1GDP BINDING SITE FOR CHAIN C | G - 188 |
Clusters included in this Subclass |
CLUSTER: HH.4.314 |