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Information on SUBCLASS 5.1.3
Subclass Accession number: 4871
Subclass: 5.1.3 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 20

Average sequence ID (%) : 14.3 +/- 15.9
Average RMSD (Å) : 0.835 +/- 0.250

Consensus geometry
d (Å): 17 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XXcXphXXX
(φψ)-conformation: aalbpppaa
Pattern: xxxx[EGNR]x[ekpqrst][FILPWY][adegnst]x[adegqst][adegnqrst][afiltv]
Conservation:-0.903-0.371-0.656-0.1952.971-0.9950.0250.712-0.160-0.4520.124-0.025-0.076
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bvu_A_3451bvu   A356368QNITGDYWTVEETHHHHS----HHHHaaaavxxxxaaaa
1cfr_*_351cfr   -5062AIRLGGKISDGSFHHHHT-B--HHHHaaaavbbbxaaaa
1ciy_*_701ciy   -8193EQLINQRIEEFARHHHHT----HHHHaaaavbxxpaaaa
1di1_A_2041di1   A214226RFSMGLRLSADELHHHHT----HHHHaaaavxbbxaaaa
1ef8_A_1331ef8   A133145PVNLGVPYNLVGIHHHHT----HHHHaaaavxxpxaaaa
1ehk_A_4041ehk   A406418PNLTGKPISDAQRHHHH-----HHHHaaaagxxbxaaaa
1f5n_A_2901f5n   A303315AISSGDLPCMENAHHHHTS--BHHHHaaaavbxwbaaaa
1fx8_A_71fx8   A3244LKVAGASFGQWEIHHHS-----HHHHaaaavxxbxaaaa
1g0u_E_821g0u   E100112SLVFNRKLAVERAHHHHS----HHHHaaaalbxxxaaaa
1gtm_A_3461gtm   A357369QNITGYYWTIEEVHHHH-----HHHHaaaavbxbxaaaa
1h99_A_2371h99   A251263EREYEHKLTSDELHHHH-----HHHHaaaalbbxxaaaa
1i5p_A_881i5p   A98110EQFLNQRLNTDTLHHHHT----HHHHaaaavbbxxaaaa
1j99_A_1911j99   A199211CQFLGKTLEPEELHHHHT----HHHHaaaavbbbxaaaa
1jmx_A_341jmx   A4557QVMHGLQISDDDRHHHH-----HHHHaaaavpbbxaaaa
1m2r_A_2511m2r   A258270LNKYRIELDPQLEHHHTT----HHHHaaaalbbxxaaaa
1nzy_A_1481nzy   A164176LMLTNRTLYPEEAHHHH---B-HHHHaaaavxxxxaaaa
1ojr_A_2531ojr   A260272GKRFGVTPLASALHHHHT----HHHHaaaavbbxpaaaa
1p80_A_5521p80   A559571AKNLGIELTDDQLHHHHT----HHHHaaaavbbxxaaaa
1v4e_A_431v4e   A5264FKNRGVEIGEDAIHHHHT----HHHHaaaavbxbxaaaa
1v54_A_3841v54   A398410PLFSGYTLNDTWAHHHHSB---HHHHaaaavbbxxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ehk_A_4041ehk   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 428
1ehk_A_4041ehk   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 432
1ehk_A_4041ehk   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 435
1ehk_A_4041ehk   A     BNGB-NONYLGLUCOSIDE A - 436
1ehk_A_4041ehk   A     BNGB-NONYLGLUCOSIDE V - 437
1ehk_A_4041ehk   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 439
1ehk_A_4041ehk   A     BNGB-NONYLGLUCOSIDE H - 440
1ehk_A_4041ehk   A     BNGB-NONYLGLUCOSIDE W - 441
1ehk_A_4041ehk   A     BNGB-NONYLGLUCOSIDE A - 442
1ehk_A_4041ehk   A     BNGB-NONYLGLUCOSIDE L - 444
1fx8_A_71fx8   A     CRYPROPANE-1,2,3-TRIOL L - 21
1fx8_A_71fx8   A     CRYPROPANE-1,2,3-TRIOL Q - 41
1fx8_A_71fx8   A     CRYPROPANE-1,2,3-TRIOL W - 48
1fx8_A_71fx8   A     CRYPROPANE-1,2,3-TRIOL G - 49
1fx8_A_71fx8   A     CRYPROPANE-1,2,3-TRIOL V - 52
1fx8_A_71fx8   A     CRYPROPANE-1,2,3-TRIOL I - 56
1j99_A_1911j99   A     HGIMERCURY (II) IODIDE E - 196
1j99_A_1911j99   A     HGIMERCURY (II) IODIDE C - 199
1j99_A_1911j99   A     HGIMERCURY (II) IODIDE Q - 200
1j99_A_1911j99   A     HGIMERCURY (II) IODIDE G - 203
1j99_A_1911j99   A     HGIMERCURY (II) IODIDE K - 204
1j99_A_1911j99   A     HGIMERCURY (II) IODIDE T - 205
1j99_A_1911j99   A     HGIMERCURY (II) IODIDE L - 206
1jmx_A_341jmx   A     HECHEME C G - 36
1jmx_A_341jmx   A     HECHEME C W - 37
1jmx_A_341jmx   A     HECHEME C M - 39
1jmx_A_341jmx   A     HECHEME C S - 40
1jmx_A_341jmx   A     HECHEME C I - 41
1jmx_A_341jmx   A     HECHEME C R - 43
1jmx_A_341jmx   A     HECHEME C M - 44
1jmx_A_341jmx   A     HECHEME C M - 47
1jmx_A_341jmx   A     HECHEME C H - 48
1jmx_A_341jmx   A     HECHEME C G - 49
1jmx_A_341jmx   A     HECHEME C L - 50
1jmx_A_341jmx   A     HECHEME C I - 52
1jmx_A_341jmx   A     HECHEME C L - 60
1jmx_A_341jmx   A     HECHEME C L - 64
1v54_A_3841v54   A     HEAHEME-A A - 385
1v54_A_3841v54   A     HEAHEME-A V - 386
1v54_A_3841v54   A     HEAHEME-A I - 389
1v54_A_3841v54   A     HEAHEME-A M - 390
1v54_A_3841v54   A     HEAHEME-A F - 393
1v54_A_3841v54   A     TGLTRISTEAROYLGLYCEROL F - 393
1v54_A_3841v54   A     TGLTRISTEAROYLGLYCEROL F - 397
1v54_A_3841v54   A     TGLTRISTEAROYLGLYCEROL F - 400
1v54_A_3841v54   A     TGLTRISTEAROYLGLYCEROL S - 401
1v54_A_3841v54   A     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE L - 405
1v54_A_3841v54   A     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE N - 406
1v54_A_3841v54   A     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE D - 407
1v54_A_3841v54   A     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE T - 408
1v54_A_3841v54   A     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE W - 409
1v54_A_3841v54   A     TGLTRISTEAROYLGLYCEROL K - 411
1v54_A_3841v54   A     PGV(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE I - 412
1v54_A_3841v54   A     TGLTRISTEAROYLGLYCEROL F - 414
1v54_A_3841v54   A     TGLTRISTEAROYLGLYCEROL A - 415
1v54_A_3841v54   A     TGLTRISTEAROYLGLYCEROL I - 416
1v54_A_3841v54   A     HEAHEME-A M - 417
1v54_A_3841v54   A     TGLTRISTEAROYLGLYCEROL F - 418
1v54_A_3841v54   A     TGLTRISTEAROYLGLYCEROL V - 419
1v54_A_3841v54   A     HEAHEME-A V - 421
1v54_A_3841v54   A     TGLTRISTEAROYLGLYCEROL N - 422
1v54_A_3841v54   A     TGLTRISTEAROYLGLYCEROL M - 423
1v54_A_3841v54   A     HEAHEME-A T - 424
1v54_A_3841v54   A     HEAHEME-A F - 425
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ojr_A_2531ojr   A GO1GOL BINDING SITE FOR CHAIN AF - 263

Clusters included in this Subclass
CLUSTER: HH.4.57
CLUSTER: HH.5.21
CLUSTER: HH.6.18