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Information on SUBCLASS 5.6.1
Subclass Accession number: 4889
Subclass: 5.6.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 13.1 +/- 16.6
Average RMSD (Å) : 0.718 +/- 0.244

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: hXXXXXpXX
(φψ)-conformation: aalababaa
Pattern: [agilvw][acdgs][aekr][aglmvwy][afgltv][aflvwy][ail][ars][DEGR][fgiklm]xx[DKNST]x[adekqrt][adekq][acgl]x[adeknr]x[afilvy][ADEGNQR]
Conservation:-0.8930.0950.541-1.127-0.706-0.3410.6760.4032.161-1.325-0.393-0.6861.794-1.292-0.3721.3460.746-0.879-0.725-0.5080.3581.126
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1brw_A_2661brw   A276297GSHMVYLAEKAPSLDEARRLLEHHHHHHHTTSSSSHHHHHHHHHaaaaaaaavabwbaaaaaaaaa
1cf2_O_3051cf2   O309330VDAVRAILEMEEDKYKSINKTNHHHHHHHTTS-S-HHHHHHHHHaaaaaaaalabaxaaaaaaaaa
1cf3_A_3731cf3   A376397WAEEAVARGGFHNTTALLIQYEHHHHHHHTTS-S-HHHHHHHHHaaaaaaaavababaaaaaaaaa
1d5r_A_1291d5r   A135156ICAYLLHRGKFLKAQEALDFYGHHHHHHHHTS-SSHHHHHHHHHaaaaaaaagababaaaaaaaaa
1dm9_A_111dm9   A1132LDKWLWAARFYKTRALAREMIEHHHHHHHTTSSSSHHHHHHHHHaaaaaaaavababaaaaaaaaa
1gpe_A_3771gpe   A380401WAEETVARGGFHNVTALKVQYEHHHHHHHTTS-S-HHHHHHHHHaaaaaaaavababaaaaaaaaa
1h3f_A_3711h3f   A371392VARLFTLAGLTPSNAEARRLIQHHHHHHHTTSSSSHHHHHHHHHaaaaaaaavababaaaaaaaaa
1jf0_A_1321jf0   A135156WKAYGRISGISPSEEDCEKTFQHHHHHHHHSS---HHHHHHHHHaaaaaaaavabwxaaaaaaaaa
1o17_A_2821o17   A292313TAVALFALDRVGDFREGYEYADHHHHHHHTTSSSSHHHHHHHHHaaaaaaaalababaaaaaaaaa
1uou_A_3001uou   A310331GGALLWLSGHAGTQAQGAARVAHHHHHHHHTS-SSHHHHHHHHHaaaaaaaavababaaaaaaaaa
1v8g_A_2781v8g   A287308AGAGFYAAGKTPSLKEGVALARHHHHHHHHTSSSSHHHHHHHHHaaaaaaaavababaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1brw_A_2661brw   A     CACALCIUM ION L - 268
1cf3_A_3731cf3   A     NAGN-ACETYL-D-GLUCOSAMINE H - 387
1cf3_A_3731cf3   A     NAGN-ACETYL-D-GLUCOSAMINE N - 388
1cf3_A_3731cf3   A     NAGN-ACETYL-D-GLUCOSAMINE T - 389
1cf3_A_3731cf3   A     NAGN-ACETYL-D-GLUCOSAMINE T - 390
1cf3_A_3731cf3   A     NAGN-ACETYL-D-GLUCOSAMINE A - 391
1cf3_A_3731cf3   A     NAGN-ACETYL-D-GLUCOSAMINE I - 394
1cf3_A_3731cf3   A     NAGN-ACETYL-D-GLUCOSAMINE I - 403
1cf3_A_3731cf3   A     NAGN-ACETYL-D-GLUCOSAMINE V - 404
1d5r_A_1291d5r   A     TARD(-)-TARTARIC ACID G - 129
1d5r_A_1291d5r   A     TARD(-)-TARTARIC ACID R - 130
1d5r_A_1291d5r   A     TARD(-)-TARTARIC ACID T - 131
1gpe_A_3771gpe   A     NAGN-ACETYL-D-GLUCOSAMINE N - 392
1gpe_A_3771gpe   A     NAGN-ACETYL-D-GLUCOSAMINE V - 393
1gpe_A_3771gpe   A     NAGN-ACETYL-D-GLUCOSAMINE T - 394
1gpe_A_3771gpe   A     NAGN-ACETYL-D-GLUCOSAMINE A - 395
1gpe_A_3771gpe   A     NAGN-ACETYL-D-GLUCOSAMINE L - 396
1gpe_A_3771gpe   A     NAGN-ACETYL-D-GLUCOSAMINE V - 398
1gpe_A_3771gpe   A     NAGN-ACETYL-D-GLUCOSAMINE L - 407
1gpe_A_3771gpe   A     NAGN-ACETYL-D-GLUCOSAMINE L - 408
1gpe_A_3771gpe   A     NAGN-ACETYL-D-GLUCOSAMINE D - 409
1jf0_A_1321jf0   A     CZHC2-HYDROPEROXY-COELENTERAZINE W - 135
1jf0_A_1321jf0   A     CZHC2-HYDROPEROXY-COELENTERAZINE Y - 138
1jf0_A_1321jf0   A     CZHC2-HYDROPEROXY-COELENTERAZINE S - 142
1jf0_A_1321jf0   A     CZHC2-HYDROPEROXY-COELENTERAZINE I - 144

Clusters included in this Subclass
CLUSTER: HH.6.25